Gene loci information

Transcript annotation

  • This transcript has been annotated as Ketohexokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g725 g725.t1 TTS g725.t1 5520513 5520513
chr_3 g725 g725.t1 isoform g725.t1 5520551 5521545
chr_3 g725 g725.t1 exon g725.t1.exon1 5520551 5520702
chr_3 g725 g725.t1 cds g725.t1.CDS1 5520551 5520702
chr_3 g725 g725.t1 exon g725.t1.exon2 5520759 5521545
chr_3 g725 g725.t1 cds g725.t1.CDS2 5520759 5521545
chr_3 g725 g725.t1 TSS g725.t1 5521710 5521710

Sequences

>g725.t1 Gene=g725 Length=939
ATGAACATAACAAATGATAAGAAAATTTTATTAATAAGAGAGTGTGTTTTAGATATTATA
CAAATTGTAAAGACATTCCCTAAGGAAGATGATGATGTAAGAAGTATCAATGCATATCAT
CAACGAGGCGGAAATGCATCAAATACTTCAACTGTATTGACAAATCTTGGTTGGAGATGC
GAGTTATTGACAACATTTGCTGATGATAAAATGTTCACATTTATAATTGAAGATTTAAAA
GATAGAAATATTGATATAAAGAACTGTCGTTATTATTCGGATTGTAACATTCCACTTTCC
ACTGTTCTCTTAAGCAAAGACACTGGTGCACGTACGATCATTCATAATAACAAAAATCTT
CCACATGTGCTGTTTGAAGATTTCGATAAATGCAATTTGAATGAATATTTTTGGGTACAT
TTTGAGGCTCGCAGTGTTCCTGAGACAACAAAAATGATGCAAAAAATCATAAAATATAAT
GAAACTGTGAATGAGAAAATTAAAATTTCTTTGGAACTTGAAAAGAAACGCGATGAAAAT
CTATTGCTTGTTAAATATGCTGATGTAGTAATTTTGGGCAGAGATTATGCTGAAATTATT
GGTTGTCACGACAAGAAAACTGCAATTTACAAATTAAAGGAAATAATGACAAACGATGAA
TGCTATAGAAATGAAAAATGTGTATTAGTTTGTCCATGGGGAAAAGATGGTGCTTGTGCA
ATAGATGATGACGGAAATTACTATGAGAACCCAATATTTGAACAAAAGGAAGTGGTTGAT
ACTTTAGGAGCGGGAGACACGTTTGTAAGTGGATTACTACACAGCCTCATGAAAAATTTC
AATGACATTCCACAAGCAATCAAAAATGGATGCATGATTGCGGGCTACAAATGCGGATTT
TATGGCTATGATTGTGTGAAAAATTTTACATTTCCATAA

>g725.t1 Gene=g725 Length=312
MNITNDKKILLIRECVLDIIQIVKTFPKEDDDVRSINAYHQRGGNASNTSTVLTNLGWRC
ELLTTFADDKMFTFIIEDLKDRNIDIKNCRYYSDCNIPLSTVLLSKDTGARTIIHNNKNL
PHVLFEDFDKCNLNEYFWVHFEARSVPETTKMMQKIIKYNETVNEKIKISLELEKKRDEN
LLLVKYADVVILGRDYAEIIGCHDKKTAIYKLKEIMTNDECYRNEKCVLVCPWGKDGACA
IDDDGNYYENPIFEQKEVVDTLGAGDTFVSGLLHSLMKNFNDIPQAIKNGCMIAGYKCGF
YGYDCVKNFTFP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g725.t1 CDD cd01939 Ketohexokinase 8 304 6.08087E-93
6 g725.t1 Gene3D G3DSA:3.40.1190.20 - 6 305 6.3E-65
2 g725.t1 PANTHER PTHR43085 HEXOKINASE FAMILY MEMBER 8 303 1.4E-32
3 g725.t1 PANTHER PTHR43085:SF1 KETOHEXOKINASE 8 303 1.4E-32
1 g725.t1 Pfam PF00294 pfkB family carbohydrate kinase 7 295 1.3E-26
5 g725.t1 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 260 273 -
4 g725.t1 SUPERFAMILY SSF53613 Ribokinase-like 7 302 8.57E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004454 ketohexokinase activity MF
GO:0006000 fructose metabolic process BP
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed