General information for g725.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ketohexokinase.
Parent gene
- The parent gene g725 is located on chr_3: 5521127..5521545 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g725 | g725.t2 | TTS | g725.t2 | 5520513 | 5520513 |
| chr_3 | g725 | g725.t2 | isoform | g725.t2 | 5520551 | 5521545 |
| chr_3 | g725 | g725.t2 | exon | g725.t2.exon1 | 5520551 | 5520693 |
| chr_3 | g725 | g725.t2 | cds | g725.t2.CDS1 | 5520551 | 5520693 |
| chr_3 | g725 | g725.t2 | exon | g725.t2.exon2 | 5520759 | 5521545 |
| chr_3 | g725 | g725.t2 | cds | g725.t2.CDS2 | 5520759 | 5521545 |
| chr_3 | g725 | g725.t2 | TSS | g725.t2 | 5521710 | 5521710 |
Sequences
>g725.t2 Gene=g725 Length=930
ATGAACATAACAAATGATAAGAAAATTTTATTAATAAGAGAGTGTGTTTTAGATATTATA
CAAATTGTAAAGACATTCCCTAAGGAAGATGATGATGTAAGAAGTATCAATGCATATCAT
CAACGAGGCGGAAATGCATCAAATACTTCAACTGTATTGACAAATCTTGGTTGGAGATGC
GAGTTATTGACAACATTTGCTGATGATAAAATGTTCACATTTATAATTGAAGATTTAAAA
GATAGAAATATTGATATAAAGAACTGTCGTTATTATTCGGATTGTAACATTCCACTTTCC
ACTGTTCTCTTAAGCAAAGACACTGGTGCACGTACGATCATTCATAATAACAAAAATCTT
CCACATGTGCTGTTTGAAGATTTCGATAAATGCAATTTGAATGAATATTTTTGGGTACAT
TTTGAGGCTCGCAGTGTTCCTGAGACAACAAAAATGATGCAAAAAATCATAAAATATAAT
GAAACTGTGAATGAGAAAATTAAAATTTCTTTGGAACTTGAAAAGAAACGCGATGAAAAT
CTATTGCTTGTTAAATATGCTGATGTAGTAATTTTGGGCAGAGATTATGCTGAAATTATT
GGTTGTCACGACAAGAAAACTGCAATTTACAAATTAAAGGAAATAATGACAAACGATGAA
TGCTATAGAAATGAAAAATGTGTATTAGTTTGTCCATGGGGAAAAGATGGTGCTTGTGCA
ATAGATGATGACGGAAATTACTATGAGAACCCAATATTTGAACAAAAGGAAGTGGTTGAT
ACTTTAGACACGTTTGTAAGTGGATTACTACACAGCCTCATGAAAAATTTCAATGACATT
CCACAAGCAATCAAAAATGGATGCATGATTGCGGGCTACAAATGCGGATTTTATGGCTAT
GATTGTGTGAAAAATTTTACATTTCCATAA
>g725.t2 Gene=g725 Length=309
MNITNDKKILLIRECVLDIIQIVKTFPKEDDDVRSINAYHQRGGNASNTSTVLTNLGWRC
ELLTTFADDKMFTFIIEDLKDRNIDIKNCRYYSDCNIPLSTVLLSKDTGARTIIHNNKNL
PHVLFEDFDKCNLNEYFWVHFEARSVPETTKMMQKIIKYNETVNEKIKISLELEKKRDEN
LLLVKYADVVILGRDYAEIIGCHDKKTAIYKLKEIMTNDECYRNEKCVLVCPWGKDGACA
IDDDGNYYENPIFEQKEVVDTLDTFVSGLLHSLMKNFNDIPQAIKNGCMIAGYKCGFYGY
DCVKNFTFP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g725.t2 | CDD | cd01939 | Ketohexokinase | 8 | 301 | 0 |
| 5 | g725.t2 | Gene3D | G3DSA:3.40.1190.20 | - | 6 | 302 | 0 |
| 2 | g725.t2 | PANTHER | PTHR43085 | HEXOKINASE FAMILY MEMBER | 8 | 300 | 0 |
| 3 | g725.t2 | PANTHER | PTHR43085:SF1 | KETOHEXOKINASE | 8 | 300 | 0 |
| 1 | g725.t2 | Pfam | PF00294 | pfkB family carbohydrate kinase | 7 | 292 | 0 |
| 4 | g725.t2 | SUPERFAMILY | SSF53613 | Ribokinase-like | 7 | 299 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004454 | ketohexokinase activity | MF |
| GO:0006000 | fructose metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed