General information for g7285.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein suppressor 2 of zeste.
Parent gene
- The parent gene g7285 is located on chr_2: 22685877..22689281 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7285 | g7285.t1 | isoform | g7285.t1 | 22682506 | 22687034 |
| chr_2 | g7285 | g7285.t1 | exon | g7285.t1.exon1 | 22682506 | 22685700 |
| chr_2 | g7285 | g7285.t1 | cds | g7285.t1.CDS1 | 22682506 | 22685700 |
| chr_2 | g7285 | g7285.t1 | exon | g7285.t1.exon2 | 22685877 | 22686132 |
| chr_2 | g7285 | g7285.t1 | cds | g7285.t1.CDS2 | 22685877 | 22686132 |
| chr_2 | g7285 | g7285.t1 | exon | g7285.t1.exon3 | 22686232 | 22686438 |
| chr_2 | g7285 | g7285.t1 | cds | g7285.t1.CDS3 | 22686232 | 22686438 |
| chr_2 | g7285 | g7285.t1 | exon | g7285.t1.exon4 | 22686724 | 22686808 |
| chr_2 | g7285 | g7285.t1 | cds | g7285.t1.CDS4 | 22686724 | 22686808 |
| chr_2 | g7285 | g7285.t1 | exon | g7285.t1.exon5 | 22686929 | 22687034 |
| chr_2 | g7285 | g7285.t1 | cds | g7285.t1.CDS5 | 22686929 | 22687034 |
| chr_2 | g7285 | g7285.t1 | TSS | g7285.t1 | NA | NA |
| chr_2 | g7285 | g7285.t1 | TTS | g7285.t1 | NA | NA |
Sequences
>g7285.t1 Gene=g7285 Length=3849
ATGATATCACGAAAACGTGTAAGAGATTTCAACAAAATTTTAACATGCCTTTTGTGCAAA
GGATACCTGATAGAGGCTACTACAATCAACACATGCATGCATTCATTTTGTCGTTCCTGT
ATAGTAAAACATATTAAACTTTATGAAACATGTCCAACCTGTGAAAGCGAAATAAGATTA
GGAAATTTAAGACCTGACTATCGATTACAATCGATTGTTTATAAAATCATTCCCGGACTA
TATGCCAAAGAGCGTCAGAAAATCACAAACGATGGCTACGAGCATCGCATAATTTTAAAT
GGATCAGGGGCAACACTAGTCAATAAACTTTACGACATCAGTAATGAGGATGAGACATTG
GCAAAGCAATATTTTTATGATCCCGATGAGCCAATAAGCTTGTCACTCGAATATCATATG
GAGTCAATATTTGGTAGTAACAATATCTCGTCATTGAGTAATAACATTCCGCAAGTGAGA
TATTTGCAAGCACCAGCAGCATTCAAAGTGCTTCATTTGAAAAAATTCCTCTCGTCTAAA
TATGATCTAAATAATCTCAAGAAACCAATGTGCATTGATATCATCTATGAAGGCGATATT
TTATCGGATGAATTTACACTCATGGATATAGCATATACCTACAAATGGGAGCGTGAGGCA
CCTTTAAAGTTGTTTTATCGTATTTACAAGAGCAAAAAACACAATAATACTAGCAATGAA
ATTAATCTCGTTAAAAAGGCTCTGACTAATCAGCCATTTGTAAAATTAAATATTATGGAT
GGATTAGAAAAGATTACAAAGAAAGTGTCATCAGGTGTCATTGATGGCAAAGGTCATAAT
AATAATAATCATTATGATGTGCAACAACAATCTTCACATCATAACGGCAATAGCAGTAAA
CGATCAAATTTAAATTTATCTACAAGTCAACAGACATCATCATCGCCACCTCGCCATGAT
TTAAAAATAATTATAGCAAAGAAACCTAGTAGCAAAAATAGTAAAGTAAAGTTGAATAAA
CCTAACAGTGGCAGCAGCAATAGCAGTGGCAACTACATCAGTAAGGTTCTAAACGACTGT
GAGCGCTTGCGTGGTAATGTTGATAATTTTACTTCGTCAGAGTTCGCTTCAACATCGGAA
ATGAAAACAACTTTAAGTAAAAAGACTGGAACGGTCTCGCATCATGATTTAAAGTTTGAG
AATAAGAGTAGCAGTAGTAGCAAGCATACAAATAACAATAAAAATAATAACAAAAATACA
AGCAGCAGCAGTAATTCAGATTCTCATGACTCTTACGAATTCACAGTGAATGAAGGAGAG
AAAGAGAAGCAAAAGCGCGAGAACACGAAACATACAAATTCATCATCATTGTCTTCTTCT
TTTTCCACTTCAACAACGACGACGGCACAAGCAATGACAGTGGAAAAATTTAAAGTGAAA
TCCAGCCTCTCTTTAAATATTCCCAAATTGAAGATTGAATTGCCAAGTTTAAAGACCAAC
ATCAGCATACCAAAAACACCAAATGAAAGTTATGCAATATCCAAGTCACCATTTAGCAAT
AATGCCAAGTGCGAACCACAAGTGAAGAAAGTTCGTTTTGATATGTCAAACACAAAAGAT
CGCTGCTATGATTTTGATGAAGAATTGGAACAACAACAAAATTCGTTATTCGATCAGCGA
AAATATGCGGAACGAATTGGACTGCGTCCAGTGGAGAGGAAAGTCGAGTCAATCATTCTA
CATCGTAAGCGCAAAAAGTCAAAGCATTCACGGGAAATAGACTCGCATTCGTCGAAGAAG
CCAAAACTGCATGTTTCATCGTCCCTTGACGATGAGAGTCTGAAATTAAAACTTAAAATC
ATGGGTGGAAAAAAGAGCGATAAAAAATTTAATAATAATGAAGAAGAGGCTTATGAGAAA
ACATGTAATTTTAAGACTACTAAAGAGAAGCATAAAGAGGCTTTAGTTGAACCATTGGAA
AACCATAAATACTCAGTTACTGAACAAAAAATTACAAAGAATTCTGATTCAGATCAGCCG
ATGGTATTTATACCAAAATTAGTACTGCAAAAAACATCACTTAGTTCATCATCATCATCA
TCGTCCTCAACGACTATAACAGATAATAATAAAAATAATTTGAAAAAAGAAGAAGCTACT
TTAAAAGTACAAAGAAGAAATTCCATTCTCAAAGAGCCACAATCAGAAAAATCAAAATCG
TCATCGTCGTCGTCGGTTTTTGACGTAGATAAATCGAAAGATATAAAATTGAAGATTAAA
CCGCTTGATAAGCTTTCTGCAAGTTCTACAGAATCAACAACAGCTAAAAATAAAAACAAC
GAGCAAATGTCAAAATTAATGAAACCGCCAACAGCAAAAATGGGCTCACCATCATCATCA
CAAATATCATCAACACTTGCATCAAGTCCAATTCGCCCAAATAGCATTCCTGCATCACTA
AAATTATCGCCCATCATAGCAACAACAGCATCACCAACAATCTCAGTCAAAAGTGATTTA
CAGTTGCAAAATCAAAATTTAAAGCGTTCATTAAGTTTGGGCGCTGAAAAATCGCCACAT
TGCTATATCAATCCTTATGCCAAGACCAATACTGAAATGTTTACACGTGATCCACCATTA
GTAAAAATTCCACCATTAATTCCAACATCATCAACAATCCGAAATTTTTATAATAATAAT
AATTTTAATAGAGATAATGAACAAATTGCAAAAGTATCACCAGTAACAATATCAAAAGTA
CCAAACATTAATGTTAAAGATCCCATGAAACTTTTCCCTAACGCATGTCCGTCTGTTGAA
ATATTGAAAATACCTCAAACTGCGTCAAATGTTAATCAACAACACCAGCCTTCAATAAAG
AATGTTAAACTTAATCGTCAAATGCCACCCACAACTATTCCTTTAGAAAAAATTAAACAA
ACAGCACAGCAGCAACAACAATTGTTGCAGGGAATATCGCCAAAATTGATACAATCACAA
CATAATAATAATTTGATGAAATTAGCATCATCTTTAAACTATCATCAGGCACCAAAAATT
AATTTACCTCATAGCGGTGATTTGTCTTTTAATTCGCAAGATCCTTGCCATAGTCCTATT
ACAAATGACATCAGTTTAGAACGCTATCATTATGAACTTTCAAAAGATATTTCAAAACTT
GATCAAAGTCTCAGTTTAGAGAAGAATTTTGAGCATTGGGGAAAAATGAAATTGCAAGAA
TTTAGTAAAATTAGTGATTTAAAAAGTTTTGCATCATCGCCAACTGCGAAAAGTCTTTTA
AATCAGCAAAATATAAATCTTTCAGTTCGTAATATTCCAAATCCATCTGCTCTCATGATG
AATAGAAACAATCAAAATAACAACAACAATGCGAACGTTCAAAAATCTCAAGCGGCATCG
CCAACTGTTTCTTCGCCGACGTGTAAAAACACAGTTAGTTCAAGCACGAGTGAACAATGC
TCGGATATTGAGGAAATCATTTCAAAATCGACAATTGCGAGAGGTTTTGAGAAAAATCCA
TTTGCTGAATTTAATTCATTCAATTTTCTATCAAGATCCTTTGCTCCAACTGCTTTCTCT
ACGTCAACAACATCAACAACAACAGCAGCAAATCATTCAAAGATTAACGAAAAAAAGAGC
ATCGAGAAGCTAACTGAATACCTCAGACAAACGGCTACAGCTGCAAAATCGAAGCAAGAG
ATGAAACAAGATGACGATAACAACAATAACAATAGCAGCGCCTCGTCAAAGAATGATAAA
AACTTTAACTTGATTGATGGTGGTAGGCAAAAGTCCTCTTCCATTGATGTTATATGCATT
GACTCTTAA
>g7285.t1 Gene=g7285 Length=1282
MISRKRVRDFNKILTCLLCKGYLIEATTINTCMHSFCRSCIVKHIKLYETCPTCESEIRL
GNLRPDYRLQSIVYKIIPGLYAKERQKITNDGYEHRIILNGSGATLVNKLYDISNEDETL
AKQYFYDPDEPISLSLEYHMESIFGSNNISSLSNNIPQVRYLQAPAAFKVLHLKKFLSSK
YDLNNLKKPMCIDIIYEGDILSDEFTLMDIAYTYKWEREAPLKLFYRIYKSKKHNNTSNE
INLVKKALTNQPFVKLNIMDGLEKITKKVSSGVIDGKGHNNNNHYDVQQQSSHHNGNSSK
RSNLNLSTSQQTSSSPPRHDLKIIIAKKPSSKNSKVKLNKPNSGSSNSSGNYISKVLNDC
ERLRGNVDNFTSSEFASTSEMKTTLSKKTGTVSHHDLKFENKSSSSSKHTNNNKNNNKNT
SSSSNSDSHDSYEFTVNEGEKEKQKRENTKHTNSSSLSSSFSTSTTTTAQAMTVEKFKVK
SSLSLNIPKLKIELPSLKTNISIPKTPNESYAISKSPFSNNAKCEPQVKKVRFDMSNTKD
RCYDFDEELEQQQNSLFDQRKYAERIGLRPVERKVESIILHRKRKKSKHSREIDSHSSKK
PKLHVSSSLDDESLKLKLKIMGGKKSDKKFNNNEEEAYEKTCNFKTTKEKHKEALVEPLE
NHKYSVTEQKITKNSDSDQPMVFIPKLVLQKTSLSSSSSSSSSTTITDNNKNNLKKEEAT
LKVQRRNSILKEPQSEKSKSSSSSSVFDVDKSKDIKLKIKPLDKLSASSTESTTAKNKNN
EQMSKLMKPPTAKMGSPSSSQISSTLASSPIRPNSIPASLKLSPIIATTASPTISVKSDL
QLQNQNLKRSLSLGAEKSPHCYINPYAKTNTEMFTRDPPLVKIPPLIPTSSTIRNFYNNN
NFNRDNEQIAKVSPVTISKVPNINVKDPMKLFPNACPSVEILKIPQTASNVNQQHQPSIK
NVKLNRQMPPTTIPLEKIKQTAQQQQQLLQGISPKLIQSQHNNNLMKLASSLNYHQAPKI
NLPHSGDLSFNSQDPCHSPITNDISLERYHYELSKDISKLDQSLSLEKNFEHWGKMKLQE
FSKISDLKSFASSPTAKSLLNQQNINLSVRNIPNPSALMMNRNNQNNNNNANVQKSQAAS
PTVSSPTCKNTVSSSTSEQCSDIEEIISKSTIARGFEKNPFAEFNSFNFLSRSFAPTAFS
TSTTSTTTAANHSKINEKKSIEKLTEYLRQTATAAKSKQEMKQDDDNNNNNSSASSKNDK
NFNLIDGGRQKSSSIDVICIDS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g7285.t1 | CDD | cd16525 | RING-HC_PCGF | 14 | 55 | 3.28883E-20 |
| 13 | g7285.t1 | CDD | cd17082 | RAWUL_PCGF2_like | 131 | 227 | 4.98365E-25 |
| 7 | g7285.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 2 | 97 | 5.6E-18 |
| 6 | g7285.t1 | Gene3D | G3DSA:3.10.20.90 | - | 122 | 236 | 1.7E-32 |
| 27 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 350 | - |
| 34 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 318 | - |
| 33 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - |
| 23 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 465 | - |
| 29 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 403 | - |
| 32 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 432 | - |
| 31 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 450 | - |
| 21 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 465 | - |
| 25 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 608 | - |
| 22 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 608 | - |
| 18 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 747 | - |
| 24 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 710 | - |
| 26 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 733 | - |
| 30 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 784 | - |
| 20 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 810 | - |
| 17 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 810 | - |
| 19 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1232 | 1267 | - |
| 28 | g7285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1246 | 1267 | - |
| 3 | g7285.t1 | PANTHER | PTHR10825:SF72 | POLYCOMB GROUP PROTEIN PSC-RELATED | 3 | 559 | 2.9E-75 |
| 4 | g7285.t1 | PANTHER | PTHR10825 | RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT | 3 | 559 | 2.9E-75 |
| 2 | g7285.t1 | Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 16 | 54 | 1.6E-6 |
| 1 | g7285.t1 | Pfam | PF16207 | RAWUL domain RING finger- and WD40-associated ubiquitin-like | 160 | 227 | 4.9E-16 |
| 9 | g7285.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 10 | g7285.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 12 | - |
| 11 | g7285.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 13 | 21 | - |
| 12 | g7285.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 26 | - |
| 8 | g7285.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 1282 | - |
| 16 | g7285.t1 | ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 32 | 41 | - |
| 35 | g7285.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 55 | 10.778 |
| 15 | g7285.t1 | SMART | SM00184 | ring_2 | 16 | 54 | 5.7E-4 |
| 5 | g7285.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 8 | 76 | 2.65E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
