General information for g7294.t106
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t106 | TSS | g7294.t106 | 22741498 | 22741498 |
| chr_2 | g7294 | g7294.t106 | isoform | g7294.t106 | 22741623 | 22743186 |
| chr_2 | g7294 | g7294.t106 | exon | g7294.t106.exon1 | 22741623 | 22741756 |
| chr_2 | g7294 | g7294.t106 | exon | g7294.t106.exon2 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t106 | exon | g7294.t106.exon3 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t106 | exon | g7294.t106.exon4 | 22742140 | 22743186 |
| chr_2 | g7294 | g7294.t106 | cds | g7294.t106.CDS1 | 22742299 | 22743186 |
| chr_2 | g7294 | g7294.t106 | TTS | g7294.t106 | 22743323 | 22743323 |
Sequences
>g7294.t106 Gene=g7294 Length=1326
ACTTTGATCGTGAAAGAGTTCCAGAACGTGTTGTCCATGCCAAAGGTGCTGGTGCTTTTG
GATATTTTGAAGTTACTCATGATATTACAAAATACTGTGCTGCAAAAGTCTTTGAAAAAG
TTGGAAAACGCACTCCTATTGCTGTGCGATTCTCAACTGTTGGTGGTGAAAGTGGATCAG
CTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACACTGATGAAGGCATTT
GGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCATCTTGTTCCCAAGTTTCATT
CACACACAAAAGAGAAATCCACAAACACACTTGAAAGACCCCAACATGTTCTGGGACTTC
CTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATT
CCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACATACATTTAAGACTGTTAATGAC
AAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACTGCACAAGGTGTCAAAAATTTG
GATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACCCAGATTATGCATTGCAAGATCTT
TTTGATGCAATTGGACGTGGTGATTTCCCACAATGGAACTTCTTCATTCAAGTTATGACA
AATGAGCAAGCAGAGCAATACAAATGGAATCCATTTGATGTCACTAAAGTTTGGTCACAC
AAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCAAACAATTAC
TTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTGGTATTGAACCA
TCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTCATATGTCGACACTCATCGTCATCGT
TTGGGTGCAAATTATCAAATGTTACCAGTTAACTGTCCATACAGAGTCAGTATCAAGAAC
TATCAACGCGATGGTCCAATGTGCTTCGACAGTCAGGGTAATGCACCAAATTATTATCCA
AACTCATTCGGTGGACCAGAACCAATTAAACGTGCTGTTGATTTGCAACCACCATACAAA
GTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGATGAAGACAATTACAGTCAAGCAACT
CTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAAAATATTGCT
GGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATGTTCTCAAAT
GTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAACAAGGCAAA
TTGTAA
>g7294.t106 Gene=g7294 Length=295
MNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELAGTNPDYALQDLFDAIGR
GDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQ
IAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDGP
MCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSADEDNYSQATLFWNNV
LDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREALNLKKQGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7294.t106 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 1 | 292 | 1.5E-132 |
| 3 | g7294.t106 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 291 | 3.2E-124 |
| 4 | g7294.t106 | PANTHER | PTHR11465 | CATALASE | 1 | 291 | 3.2E-124 |
| 6 | g7294.t106 | PRINTS | PR00067 | Catalase signature | 98 | 125 | 1.5E-26 |
| 5 | g7294.t106 | PRINTS | PR00067 | Catalase signature | 130 | 156 | 1.5E-26 |
| 2 | g7294.t106 | Pfam | PF00199 | Catalase | 1 | 198 | 1.5E-93 |
| 1 | g7294.t106 | Pfam | PF06628 | Catalase-related immune-responsive | 225 | 287 | 6.9E-19 |
| 9 | g7294.t106 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 143 | 151 | - |
| 11 | g7294.t106 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 293 | 41.548 |
| 10 | g7294.t106 | SMART | SM01060 | Catalase_2 | 1 | 201 | 1.4E-62 |
| 7 | g7294.t106 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 289 | 8.64E-112 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
