Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t13 TSS g7294.t13 22738599 22738599
chr_2 g7294 g7294.t13 isoform g7294.t13 22738614 22742030
chr_2 g7294 g7294.t13 exon g7294.t13.exon1 22738614 22738668
chr_2 g7294 g7294.t13 exon g7294.t13.exon2 22738732 22738820
chr_2 g7294 g7294.t13 cds g7294.t13.CDS1 22738773 22738820
chr_2 g7294 g7294.t13 exon g7294.t13.exon3 22741499 22741756
chr_2 g7294 g7294.t13 cds g7294.t13.CDS2 22741499 22741756
chr_2 g7294 g7294.t13 exon g7294.t13.exon4 22741834 22741861
chr_2 g7294 g7294.t13 cds g7294.t13.CDS3 22741834 22741861
chr_2 g7294 g7294.t13 exon g7294.t13.exon5 22741922 22742030
chr_2 g7294 g7294.t13 cds g7294.t13.CDS4 22741922 22742028
chr_2 g7294 g7294.t13 TTS g7294.t13 NA NA

Sequences

>g7294.t13 Gene=g7294 Length=539
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTC
TCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCT
GTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTT

>g7294.t13 Gene=g7294 Length=147
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7294.t13 Gene3D G3DSA:1.10.8.1230 - 2 63 4.1E-23
9 g7294.t13 Gene3D G3DSA:2.40.180.20 - 64 147 7.6E-47
2 g7294.t13 PANTHER PTHR11465:SF25 PEROXISOMAL CATALASE 1 3 147 1.4E-65
3 g7294.t13 PANTHER PTHR11465 CATALASE 3 147 1.4E-65
7 g7294.t13 PRINTS PR00067 Catalase signature 36 59 9.4E-35
6 g7294.t13 PRINTS PR00067 Catalase signature 99 117 9.4E-35
5 g7294.t13 PRINTS PR00067 Catalase signature 120 137 9.4E-35
4 g7294.t13 PRINTS PR00067 Catalase signature 139 147 9.4E-35
1 g7294.t13 Pfam PF00199 Catalase 24 147 9.4E-62
11 g7294.t13 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
13 g7294.t13 ProSiteProfiles PS51402 catalase family profile. 19 147 26.584
12 g7294.t13 SMART SM01060 Catalase_2 23 147 3.5E-10
8 g7294.t13 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 147 3.93E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values