Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t18 TSS g7294.t18 22738599 22738599
chr_2 g7294 g7294.t18 isoform g7294.t18 22738614 22742481
chr_2 g7294 g7294.t18 exon g7294.t18.exon1 22738614 22738672
chr_2 g7294 g7294.t18 exon g7294.t18.exon2 22738732 22738820
chr_2 g7294 g7294.t18 cds g7294.t18.CDS1 22738773 22738820
chr_2 g7294 g7294.t18 exon g7294.t18.exon3 22741499 22741777
chr_2 g7294 g7294.t18 cds g7294.t18.CDS2 22741499 22741777
chr_2 g7294 g7294.t18 exon g7294.t18.exon4 22741922 22742042
chr_2 g7294 g7294.t18 cds g7294.t18.CDS3 22741922 22742042
chr_2 g7294 g7294.t18 exon g7294.t18.exon5 22742132 22742481
chr_2 g7294 g7294.t18 cds g7294.t18.CDS4 22742132 22742481
chr_2 g7294 g7294.t18 TTS g7294.t18 22743323 22743323

Sequences

>g7294.t18 Gene=g7294 Length=898
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTGTT
GTGTGTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCA
ACTTAGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGG
TGCACCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTT
GCAAGATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACG
TGTTGTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTAC
AAAATACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGA
ACTTTTTGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTT
AAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTC
ATTCGTAAGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACA
AACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAAC
TCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAA
TGGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAA
ATTCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATT
GGCAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGT

>g7294.t18 Gene=g7294 Length=266
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTVSCFELFVVKVDQLILFV
ILVVLLLNSTLMKAFGIWLAITHRFSSFVSDPILFPSFIHTQKRNPQTHLKDPNMFWDFL
TLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLD
IKKAEELAGTNPDYALQDLFDAIGRG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7294.t18 Gene3D G3DSA:1.10.8.1230 - 2 63 1.3E-22
7 g7294.t18 Gene3D G3DSA:2.40.180.20 - 64 266 7.6E-75
8 g7294.t18 Gene3D G3DSA:1.20.1370.60 - 147 197 7.6E-75
3 g7294.t18 PANTHER PTHR11465:SF25 PEROXISOMAL CATALASE 1 3 266 7.4E-93
4 g7294.t18 PANTHER PTHR11465 CATALASE 3 266 7.4E-93
1 g7294.t18 Pfam PF00199 Catalase 24 103 6.6E-31
2 g7294.t18 Pfam PF00199 Catalase 148 266 9.4E-51
10 g7294.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 115 -
12 g7294.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 141 -
11 g7294.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 142 266 -
14 g7294.t18 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
16 g7294.t18 ProSiteProfiles PS51402 catalase family profile. 19 266 35.002
15 g7294.t18 SMART SM01060 Catalase_2 23 266 4.6E-41
5 g7294.t18 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 102 1.15E-32
6 g7294.t18 SUPERFAMILY SSF56634 Heme-dependent catalase-like 148 266 6.54E-50
13 g7294.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 116 138 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed