General information for g7294.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t19 | TSS | g7294.t19 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t19 | isoform | g7294.t19 | 22738614 | 22742516 |
| chr_2 | g7294 | g7294.t19 | exon | g7294.t19.exon1 | 22738614 | 22738668 |
| chr_2 | g7294 | g7294.t19 | exon | g7294.t19.exon2 | 22738732 | 22738820 |
| chr_2 | g7294 | g7294.t19 | exon | g7294.t19.exon3 | 22741499 | 22741777 |
| chr_2 | g7294 | g7294.t19 | exon | g7294.t19.exon4 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t19 | exon | g7294.t19.exon5 | 22742132 | 22742516 |
| chr_2 | g7294 | g7294.t19 | cds | g7294.t19.CDS1 | 22742206 | 22742514 |
| chr_2 | g7294 | g7294.t19 | TTS | g7294.t19 | 22743323 | 22743323 |
Sequences
>g7294.t19 Gene=g7294 Length=925
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGAACTT
TTTGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAAT
TCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTC
GTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACT
TGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAG
TTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATG
GTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATT
ACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAA
CAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCAC
AATGGAACTTCTTCATTCAAGTTAT
>g7294.t19 Gene=g7294 Length=103
MFWDFLTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQ
GVKNLDIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7294.t19 | Gene3D | G3DSA:1.20.1370.60 | - | 1 | 23 | 0.0000 |
| 6 | g7294.t19 | Gene3D | G3DSA:2.40.180.20 | - | 24 | 103 | 0.0000 |
| 2 | g7294.t19 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 103 | 0.0000 |
| 3 | g7294.t19 | PANTHER | PTHR11465 | CATALASE | 1 | 103 | 0.0000 |
| 1 | g7294.t19 | Pfam | PF00199 | Catalase | 1 | 103 | 0.0000 |
| 8 | g7294.t19 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 103 | 19.7880 |
| 5 | g7294.t19 | SMART | SM01060 | Catalase_2 | 1 | 103 | 0.0007 |
| 4 | g7294.t19 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 103 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed