Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t2 isoform g7294.t2 22738316 22742481
chr_2 g7294 g7294.t2 exon g7294.t2.exon1 22738316 22738546
chr_2 g7294 g7294.t2 exon g7294.t2.exon2 22738616 22738670
chr_2 g7294 g7294.t2 exon g7294.t2.exon3 22738732 22738820
chr_2 g7294 g7294.t2 cds g7294.t2.CDS1 22738773 22738820
chr_2 g7294 g7294.t2 exon g7294.t2.exon4 22741499 22741756
chr_2 g7294 g7294.t2 cds g7294.t2.CDS2 22741499 22741756
chr_2 g7294 g7294.t2 exon g7294.t2.exon5 22741834 22742038
chr_2 g7294 g7294.t2 cds g7294.t2.CDS3 22741834 22741869
chr_2 g7294 g7294.t2 exon g7294.t2.exon6 22742132 22742481
chr_2 g7294 g7294.t2 TTS g7294.t2 22743323 22743323
chr_2 g7294 g7294.t2 TSS g7294.t2 NA NA

Sequences

>g7294.t2 Gene=g7294 Length=1188
ACTTTAGTTCTAAAAAAAGCGATTCGCATCTCGAAGTGTTGTTTTTTTCACATACATAAA
AAACTTCTCTCTTCTTCGCACTGACAGACTTGTTTTGAATGTTTTGGTTCACGTCAACAA
AAAGTATAAAATACAAATAAAATTTGAGTGCAATTCATTTGAGTCGTAATTAATAAATTT
GCCCATAGGAAAAATTATTAAGAGAGAATTTAAAGAGAGCAAAAAAGAGAGTTTTCGTAC
AATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTTGTGTGTGATTTGA
AGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTTAGTGACTTT
AAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCACCAATCGGT
GTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAAGATGCAAAT
TACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTTGTCCATGCC
AAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAATACTGTGCT
GCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTCTCAACTGTT
GGTAAATGATAAAAAAAATTAACATTGATGAACAATTAAGGTTAAAATAATTTATTCATA
GGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTC
TACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGT
GATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTG
AAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTT
ATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGT
TCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTAC
AAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACA
AACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGT

>g7294.t2 Gene=g7294 Length=113
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7294.t2 Gene3D G3DSA:1.10.8.1230 - 2 63 2.1E-23
8 g7294.t2 Gene3D G3DSA:2.40.180.20 - 64 111 2.5E-22
2 g7294.t2 PANTHER PTHR11465:SF25 PEROXISOMAL CATALASE 1 3 112 4.0E-42
3 g7294.t2 PANTHER PTHR11465 CATALASE 3 112 4.0E-42
5 g7294.t2 PRINTS PR00067 Catalase signature 36 59 3.1E-14
4 g7294.t2 PRINTS PR00067 Catalase signature 99 113 3.1E-14
1 g7294.t2 Pfam PF00199 Catalase 24 112 8.5E-38
7 g7294.t2 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
10 g7294.t2 ProSiteProfiles PS51402 catalase family profile. 19 113 17.221
6 g7294.t2 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 112 1.96E-40

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values