Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t22 TSS g7294.t22 22738599 22738599
chr_2 g7294 g7294.t22 isoform g7294.t22 22738614 22742625
chr_2 g7294 g7294.t22 exon g7294.t22.exon1 22738614 22738668
chr_2 g7294 g7294.t22 exon g7294.t22.exon2 22738732 22738820
chr_2 g7294 g7294.t22 exon g7294.t22.exon3 22741499 22741771
chr_2 g7294 g7294.t22 exon g7294.t22.exon4 22741922 22742038
chr_2 g7294 g7294.t22 exon g7294.t22.exon5 22742132 22742625
chr_2 g7294 g7294.t22 cds g7294.t22.CDS1 22742206 22742625
chr_2 g7294 g7294.t22 TTS g7294.t22 22743323 22743323

Sequences

>g7294.t22 Gene=g7294 Length=1028
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTTGTTTTGAAGTG
GTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACA
CTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGATC
CAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAAAG
ACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGT
TTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCAC
ATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGA
CTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACC
CAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATGGA
ACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATTTG
ATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTT
TGGATAGA

>g7294.t22 Gene=g7294 Length=140
MFWDFLTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQ
GVKNLDIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVT
KVWSHKDFPLIPVGRMVLDR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7294.t22 Gene3D G3DSA:1.20.1370.60 - 1 23 0.000
6 g7294.t22 Gene3D G3DSA:2.40.180.20 - 24 140 0.000
2 g7294.t22 PANTHER PTHR11465:SF9 CATALASE 1 140 0.000
3 g7294.t22 PANTHER PTHR11465 CATALASE 1 140 0.000
1 g7294.t22 Pfam PF00199 Catalase 1 140 0.000
8 g7294.t22 ProSiteProfiles PS51402 catalase family profile. 1 140 26.489
5 g7294.t22 SMART SM01060 Catalase_2 1 140 0.000
4 g7294.t22 SUPERFAMILY SSF56634 Heme-dependent catalase-like 1 140 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed