General information for g7294.t25
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t25 | TSS | g7294.t25 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t25 | isoform | g7294.t25 | 22738614 | 22742803 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon1 | 22738614 | 22738670 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon2 | 22738732 | 22738820 |
| chr_2 | g7294 | g7294.t25 | cds | g7294.t25.CDS1 | 22738773 | 22738820 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon3 | 22741499 | 22741756 |
| chr_2 | g7294 | g7294.t25 | cds | g7294.t25.CDS2 | 22741499 | 22741756 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon4 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t25 | cds | g7294.t25.CDS3 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon5 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t25 | cds | g7294.t25.CDS4 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t25 | exon | g7294.t25.exon6 | 22742132 | 22742803 |
| chr_2 | g7294 | g7294.t25 | cds | g7294.t25.CDS5 | 22742132 | 22742802 |
| chr_2 | g7294 | g7294.t25 | TTS | g7294.t25 | 22743323 | 22743323 |
Sequences
>g7294.t25 Gene=g7294 Length=1221
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTTGT
GTGTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAAC
TTAGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTG
CACCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGC
AAGATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTG
TTGTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAA
AATACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGAT
TCTCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTG
CTGTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTT
TCTTCATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCAC
AAACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAA
CTCATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGA
ATGGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTA
AATTCCATTACAAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAAT
TGGCAGGAACAAACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTG
ATTTCCCACAATGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACA
AATGGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAG
TTGGTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTG
CATTTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAG
GTCGTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGT
TACCAGTTAACTGTCCATACA
>g7294.t25 Gene=g7294 Length=374
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDF
LTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNL
DIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSH
KDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHR
LGANYQMLPVNCPY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g7294.t25 | Gene3D | G3DSA:1.10.8.1230 | - | 2 | 63 | 2.3E-22 |
| 11 | g7294.t25 | Gene3D | G3DSA:2.40.180.20 | - | 64 | 372 | 2.3E-180 |
| 12 | g7294.t25 | Gene3D | G3DSA:1.20.1370.60 | - | 148 | 198 | 2.3E-180 |
| 2 | g7294.t25 | PANTHER | PTHR11465:SF9 | CATALASE | 20 | 374 | 1.6E-201 |
| 3 | g7294.t25 | PANTHER | PTHR11465 | CATALASE | 20 | 374 | 1.6E-201 |
| 9 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 36 | 59 | 1.9E-72 |
| 8 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 99 | 117 | 1.9E-72 |
| 7 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 120 | 137 | 1.9E-72 |
| 5 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 139 | 157 | 1.9E-72 |
| 4 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 304 | 331 | 1.9E-72 |
| 6 | g7294.t25 | PRINTS | PR00067 | Catalase signature | 336 | 362 | 1.9E-72 |
| 1 | g7294.t25 | Pfam | PF00199 | Catalase | 24 | 373 | 6.7E-188 |
| 15 | g7294.t25 | ProSitePatterns | PS00438 | Catalase proximal active site signature. | 59 | 75 | - |
| 14 | g7294.t25 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 349 | 357 | - |
| 17 | g7294.t25 | ProSiteProfiles | PS51402 | catalase family profile. | 19 | 374 | 72.312 |
| 16 | g7294.t25 | SMART | SM01060 | Catalase_2 | 23 | 374 | 1.3E-247 |
| 10 | g7294.t25 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 15 | 374 | 1.13E-182 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K03781 (catalase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed