General information for g7294.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t29 | TSS | g7294.t29 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t29 | isoform | g7294.t29 | 22738614 | 22743186 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon1 | 22738614 | 22738668 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon2 | 22738732 | 22738820 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon3 | 22741509 | 22741756 |
| chr_2 | g7294 | g7294.t29 | cds | g7294.t29.CDS1 | 22741616 | 22741756 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon4 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t29 | cds | g7294.t29.CDS2 | 22741834 | 22741861 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon5 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t29 | cds | g7294.t29.CDS3 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t29 | exon | g7294.t29.exon6 | 22742132 | 22743186 |
| chr_2 | g7294 | g7294.t29 | cds | g7294.t29.CDS4 | 22742132 | 22743186 |
| chr_2 | g7294 | g7294.t29 | TTS | g7294.t29 | 22743323 | 22743323 |
Sequences
>g7294.t29 Gene=g7294 Length=1592
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGCTGTTGCTACTGTTGGAAATGGTGCACCAATCGGTG
TTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAAGATGCAAATT
ACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTTGTCCATGCCA
AAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAATACTGTGCTG
CAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTCTCAACTGTTG
GTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCT
ACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTG
ATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGA
AAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTA
TGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTT
CACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACA
AGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAA
ACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAAT
GGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCAT
TTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGG
TTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCAT
CAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCT
CATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACT
GTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTC
AGGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTG
CTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTG
ATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAA
GAAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAG
AACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAG
CACTCAATCTTAAGAAACAAGGCAAATTGTAA
>g7294.t29 Gene=g7294 Length=446
MSHFDRERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGES
GSADTVRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPN
MFWDFLTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQ
GVKNLDIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVT
KVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVD
THRHRLGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDL
QPPYKVSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGV
NMFSNVSSDFGQKLREALNLKKQGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g7294.t29 | CDD | cd08156 | catalase_clade_3 | 8 | 438 | 0.0 |
| 12 | g7294.t29 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 1 | 443 | 3.7E-227 |
| 3 | g7294.t29 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 442 | 2.6E-227 |
| 4 | g7294.t29 | PANTHER | PTHR11465 | CATALASE | 1 | 442 | 2.6E-227 |
| 13 | g7294.t29 | PIRSF | PIRSF038928 | Catalase_clade1-3 | 1 | 444 | 3.4E-203 |
| 10 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 5 | 27 | 5.6E-76 |
| 9 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 44 | 62 | 5.6E-76 |
| 7 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 65 | 82 | 5.6E-76 |
| 6 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 84 | 102 | 5.6E-76 |
| 8 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 249 | 276 | 5.6E-76 |
| 5 | g7294.t29 | PRINTS | PR00067 | Catalase signature | 281 | 307 | 5.6E-76 |
| 2 | g7294.t29 | Pfam | PF00199 | Catalase | 1 | 349 | 3.1E-186 |
| 1 | g7294.t29 | Pfam | PF06628 | Catalase-related immune-responsive | 376 | 438 | 1.3E-18 |
| 17 | g7294.t29 | ProSitePatterns | PS00438 | Catalase proximal active site signature. | 4 | 20 | - |
| 16 | g7294.t29 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 294 | 302 | - |
| 18 | g7294.t29 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 444 | 75.4 |
| 15 | g7294.t29 | SMART | SM01060 | Catalase_2 | 1 | 352 | 2.6E-249 |
| 11 | g7294.t29 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 442 | 8.64E-198 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0042744 | hydrogen peroxide catabolic process | BP |
| GO:0055114 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K03781 (catalase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
