Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t32 TSS g7294.t32 22738599 22738599
chr_2 g7294 g7294.t32 isoform g7294.t32 22738614 22743186
chr_2 g7294 g7294.t32 exon g7294.t32.exon1 22738614 22738672
chr_2 g7294 g7294.t32 exon g7294.t32.exon2 22738732 22738820
chr_2 g7294 g7294.t32 cds g7294.t32.CDS1 22738773 22738820
chr_2 g7294 g7294.t32 exon g7294.t32.exon3 22741499 22741756
chr_2 g7294 g7294.t32 cds g7294.t32.CDS2 22741499 22741756
chr_2 g7294 g7294.t32 exon g7294.t32.exon4 22741909 22742038
chr_2 g7294 g7294.t32 cds g7294.t32.CDS3 22741909 22742038
chr_2 g7294 g7294.t32 exon g7294.t32.exon5 22742132 22743186
chr_2 g7294 g7294.t32 cds g7294.t32.CDS4 22742132 22743186
chr_2 g7294 g7294.t32 TTS g7294.t32 22743323 22743323

Sequences

>g7294.t32 Gene=g7294 Length=1591
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTGTT
GTGTGTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCA
ACTTAGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGG
TGCACCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTT
GCAAGATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACG
TGTTGTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTAC
AAAATACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTAATTTATTCATAGG
TGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTA
CACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGA
TCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAA
AGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTAT
GTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTC
ACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAA
GACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAA
CCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATG
GAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATT
TGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGT
TTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATC
AAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTC
ATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACTG
TCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTCA
GGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTGC
TGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGA
TGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAG
AAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGA
ACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGC
ACTCAATCTTAAGAAACAAGGCAAATTGTAA

>g7294.t32 Gene=g7294 Length=496
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTNLFIGGESGSADTVRDPR
GFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTLRP
ESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKA
EELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPL
IPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANY
QMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEV
FRYDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDF
GQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7294.t32 CDD cd08156 catalase_clade_3 63 488 0.0
11 g7294.t32 Gene3D G3DSA:2.40.180.10 Catalase HpII 20 493 2.8E-230
3 g7294.t32 PANTHER PTHR11465:SF9 CATALASE 20 492 5.2E-231
4 g7294.t32 PANTHER PTHR11465 CATALASE 20 492 5.2E-231
12 g7294.t32 PIRSF PIRSF038928 Catalase_clade1-3 10 494 1.0E-205
9 g7294.t32 PRINTS PR00067 Catalase signature 36 59 7.2E-61
6 g7294.t32 PRINTS PR00067 Catalase signature 115 132 7.2E-61
8 g7294.t32 PRINTS PR00067 Catalase signature 134 152 7.2E-61
5 g7294.t32 PRINTS PR00067 Catalase signature 299 326 7.2E-61
7 g7294.t32 PRINTS PR00067 Catalase signature 331 357 7.2E-61
2 g7294.t32 Pfam PF00199 Catalase 24 399 3.1E-188
1 g7294.t32 Pfam PF06628 Catalase-related immune-responsive 426 488 1.5E-18
16 g7294.t32 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
15 g7294.t32 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 344 352 -
17 g7294.t32 ProSiteProfiles PS51402 catalase family profile. 19 494 76.285
14 g7294.t32 SMART SM01060 Catalase_2 23 402 4.0E-268
10 g7294.t32 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 492 1.06E-202

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values