Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t4 isoform g7294.t4 22738316 22743186
chr_2 g7294 g7294.t4 exon g7294.t4.exon1 22738316 22738546
chr_2 g7294 g7294.t4 exon g7294.t4.exon2 22738616 22738670
chr_2 g7294 g7294.t4 exon g7294.t4.exon3 22738732 22738820
chr_2 g7294 g7294.t4 cds g7294.t4.CDS1 22738773 22738820
chr_2 g7294 g7294.t4 exon g7294.t4.exon4 22741499 22741756
chr_2 g7294 g7294.t4 cds g7294.t4.CDS2 22741499 22741756
chr_2 g7294 g7294.t4 exon g7294.t4.exon5 22741834 22741861
chr_2 g7294 g7294.t4 cds g7294.t4.CDS3 22741834 22741861
chr_2 g7294 g7294.t4 exon g7294.t4.exon6 22741922 22742038
chr_2 g7294 g7294.t4 cds g7294.t4.CDS4 22741922 22742038
chr_2 g7294 g7294.t4 exon g7294.t4.exon7 22742132 22743186
chr_2 g7294 g7294.t4 cds g7294.t4.CDS5 22742132 22743186
chr_2 g7294 g7294.t4 TTS g7294.t4 22743323 22743323
chr_2 g7294 g7294.t4 TSS g7294.t4 NA NA

Sequences

>g7294.t4 Gene=g7294 Length=1833
ACTTTAGTTCTAAAAAAAGCGATTCGCATCTCGAAGTGTTGTTTTTTTCACATACATAAA
AAACTTCTCTCTTCTTCGCACTGACAGACTTGTTTTGAATGTTTTGGTTCACGTCAACAA
AAAGTATAAAATACAAATAAAATTTGAGTGCAATTCATTTGAGTCGTAATTAATAAATTT
GCCCATAGGAAAAATTATTAAGAGAGAATTTAAAGAGAGCAAAAAAGAGAGTTTTCGTAC
AATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTTGTGTGTGATTTGA
AGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTTAGTGACTTT
AAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCACCAATCGGT
GTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAAGATGCAAAT
TACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTTGTCCATGCC
AAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAATACTGTGCT
GCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTCTCAACTGTT
GGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTC
TACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGT
GATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTG
AAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTT
ATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGT
TCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTAC
AAGACTGCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACA
AACCCAGATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAA
TGGAACTTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCA
TTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATG
GTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCA
TCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTC
TCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAAC
TGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGT
CAGGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGT
GCTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCT
GATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCA
AGAAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAA
GAACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAA
GCACTCAATCTTAAGAAACAAGGCAAATTGTAA

>g7294.t4 Gene=g7294 Length=501
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDF
LTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNL
DIKKAEELAGTNPDYALQDLFDAIGRGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSH
KDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHR
LGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYK
VSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSN
VSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7294.t4 CDD cd08156 catalase_clade_3 63 493 0.0
12 g7294.t4 Gene3D G3DSA:2.40.180.10 Catalase HpII 20 498 2.1E-239
3 g7294.t4 PANTHER PTHR11465:SF9 CATALASE 20 497 2.8E-239
4 g7294.t4 PANTHER PTHR11465 CATALASE 20 497 2.8E-239
13 g7294.t4 PIRSF PIRSF038928 Catalase_clade1-3 10 499 1.8E-213
10 g7294.t4 PRINTS PR00067 Catalase signature 36 59 5.3E-72
9 g7294.t4 PRINTS PR00067 Catalase signature 99 117 5.3E-72
8 g7294.t4 PRINTS PR00067 Catalase signature 120 137 5.3E-72
6 g7294.t4 PRINTS PR00067 Catalase signature 139 157 5.3E-72
5 g7294.t4 PRINTS PR00067 Catalase signature 304 331 5.3E-72
7 g7294.t4 PRINTS PR00067 Catalase signature 336 362 5.3E-72
2 g7294.t4 Pfam PF00199 Catalase 24 404 1.0E-196
1 g7294.t4 Pfam PF06628 Catalase-related immune-responsive 431 493 1.6E-18
17 g7294.t4 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
16 g7294.t4 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 349 357 -
18 g7294.t4 ProSiteProfiles PS51402 catalase family profile. 19 499 79.492
15 g7294.t4 SMART SM01060 Catalase_2 23 407 2.3E-279
11 g7294.t4 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 497 6.8E-211

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values