General information for g7294.t40
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Catalase.
Parent gene
- The parent gene g7294 is located on chr_2: 22742132..22746850 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7294 | g7294.t40 | TSS | g7294.t40 | 22738599 | 22738599 |
| chr_2 | g7294 | g7294.t40 | isoform | g7294.t40 | 22738614 | 22743186 |
| chr_2 | g7294 | g7294.t40 | exon | g7294.t40.exon1 | 22738614 | 22738756 |
| chr_2 | g7294 | g7294.t40 | exon | g7294.t40.exon2 | 22741499 | 22741760 |
| chr_2 | g7294 | g7294.t40 | cds | g7294.t40.CDS1 | 22741616 | 22741760 |
| chr_2 | g7294 | g7294.t40 | exon | g7294.t40.exon3 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t40 | cds | g7294.t40.CDS2 | 22741922 | 22742038 |
| chr_2 | g7294 | g7294.t40 | exon | g7294.t40.exon4 | 22742132 | 22742386 |
| chr_2 | g7294 | g7294.t40 | cds | g7294.t40.CDS3 | 22742132 | 22742386 |
| chr_2 | g7294 | g7294.t40 | exon | g7294.t40.exon5 | 22742534 | 22743186 |
| chr_2 | g7294 | g7294.t40 | cds | g7294.t40.CDS4 | 22742534 | 22743186 |
| chr_2 | g7294 | g7294.t40 | TTS | g7294.t40 | 22743323 | 22743323 |
Sequences
>g7294.t40 Gene=g7294 Length=1430
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTGTGTG
TATTAAGAAGAAGTTCAAGTGAAAATTTTGCATAATTTACAAGTCTTTTTTATTTCAGTG
TGTGTGATTTGAAGTGAACAAAAAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCAC
CAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAAG
ATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTTG
TCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAAT
ACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTGTGAGTGGTGAAAGTGGAT
CAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCTGTTAAATTCTACACTGATGAAGGCA
TTTGGGATTTGGTTGGCAATAACACACCGATTTTCTTCATTCGTGATCCAATCTTGTTCC
CAAGTTTCATTCACACACAAAAGAGAAATCCACAAACACACTTGAAAGACCCCAACATGT
TCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTTTTGTTTGCTG
ATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACATACATTTAAGA
CTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACTGCACAAGAGC
AATACAAATGGAATCCATTTGATGTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGA
TTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCAAACAATTACTTTGCTGAAGTTGAAC
AAATTGCATTTTGTCCATCAAATATGGTGCCTGGTATTGAACCATCACCAGATAAGATGT
TGCAAGGTCGTCTTTTCTCATATGTCGACACTCATCGTCATCGTTTGGGTGCAAATTATC
AAATGTTACCAGTTAACTGTCCATACAGAGTCAGTATCAAGAACTATCAACGCGATGGTC
CAATGTGCTTCGACAGTCAGGGTAATGCACCAAATTATTATCCAAACTCATTCGGTGGAC
CAGAACCAATTAAACGTGCTGTTGATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTT
TCCGTTATGATAGTGCTGATGAAGACAATTACAGTCAAGCAACTCTTTTCTGGAATAATG
TTTTGGATGAACCTGCAAGAAACCGCATGGTTGAAAATATTGCTGGACATCTTGTTAATG
CTGCAGAATTTATTCAAGAACGCGGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCG
GTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAACAAGGCAAATTGTAA
>g7294.t40 Gene=g7294 Length=389
MSHFDRERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTVSGESGSADTVRD
PRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDFLTL
RPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQEQYKWNPF
DVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGRLFS
YVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPIKRA
VDLQPPYKVSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEFIQE
RGVNMFSNVSSDFGQKLREALNLKKQGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7294.t40 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 1 | 172 | 5.6E-93 |
| 11 | g7294.t40 | Gene3D | G3DSA:2.40.180.10 | Catalase HpII | 173 | 386 | 1.8E-94 |
| 5 | g7294.t40 | PANTHER | PTHR11465:SF9 | CATALASE | 1 | 172 | 3.3E-187 |
| 7 | g7294.t40 | PANTHER | PTHR11465 | CATALASE | 1 | 172 | 3.3E-187 |
| 4 | g7294.t40 | PANTHER | PTHR11465:SF9 | CATALASE | 173 | 385 | 3.3E-187 |
| 6 | g7294.t40 | PANTHER | PTHR11465 | CATALASE | 173 | 385 | 3.3E-187 |
| 9 | g7294.t40 | PRINTS | PR00067 | Catalase signature | 5 | 27 | 9.9E-22 |
| 8 | g7294.t40 | PRINTS | PR00067 | Catalase signature | 76 | 94 | 9.9E-22 |
| 2 | g7294.t40 | Pfam | PF00199 | Catalase | 1 | 173 | 3.8E-89 |
| 3 | g7294.t40 | Pfam | PF00199 | Catalase | 171 | 292 | 5.4E-57 |
| 1 | g7294.t40 | Pfam | PF06628 | Catalase-related immune-responsive | 319 | 381 | 1.1E-18 |
| 14 | g7294.t40 | ProSitePatterns | PS00438 | Catalase proximal active site signature. | 4 | 20 | - |
| 13 | g7294.t40 | ProSitePatterns | PS00437 | Catalase proximal heme-ligand signature. | 237 | 245 | - |
| 16 | g7294.t40 | ProSiteProfiles | PS51402 | catalase family profile. | 1 | 387 | 56.912 |
| 15 | g7294.t40 | SMART | SM01060 | Catalase_2 | 1 | 295 | 3.0E-184 |
| 10 | g7294.t40 | SUPERFAMILY | SSF56634 | Heme-dependent catalase-like | 1 | 385 | 1.06E-163 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004096 | catalase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
