Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t56 TSS g7294.t56 22738599 22738599
chr_2 g7294 g7294.t56 isoform g7294.t56 22738614 22743186
chr_2 g7294 g7294.t56 exon g7294.t56.exon1 22738614 22738668
chr_2 g7294 g7294.t56 exon g7294.t56.exon2 22738732 22738820
chr_2 g7294 g7294.t56 cds g7294.t56.CDS1 22738773 22738820
chr_2 g7294 g7294.t56 exon g7294.t56.exon3 22741499 22741756
chr_2 g7294 g7294.t56 cds g7294.t56.CDS2 22741499 22741756
chr_2 g7294 g7294.t56 exon g7294.t56.exon4 22741834 22741861
chr_2 g7294 g7294.t56 cds g7294.t56.CDS3 22741834 22741861
chr_2 g7294 g7294.t56 exon g7294.t56.exon5 22741922 22742038
chr_2 g7294 g7294.t56 cds g7294.t56.CDS4 22741922 22742038
chr_2 g7294 g7294.t56 exon g7294.t56.exon6 22742207 22743186
chr_2 g7294 g7294.t56 cds g7294.t56.CDS5 22742207 22743186
chr_2 g7294 g7294.t56 TTS g7294.t56 22743323 22743323

Sequences

>g7294.t56 Gene=g7294 Length=1527
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTC
TCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCT
GTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTC
TTCATTCTGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACTCATCAAGTTATGTTT
TTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAATGGTTATGGTTCACAT
ACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAATTCCATTACAAGACT
GCACAAGGTGTCAAAAATTTGGATATCAAGAAAGCTGAGGAATTGGCAGGAACAAACCCA
GATTATGCATTGCAAGATCTTTTTGATGCAATTGGACGTGGTGATTTCCCACAATGGAAC
TTCTTCATTCAAGTTATGACAAATGAGCAAGCAGAGCAATACAAATGGAATCCATTTGAT
GTCACTAAAGTTTGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTG
GATAGAAATCCAAACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAAT
ATGGTGCCTGGTATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTCATAT
GTCGACACTCATCGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACTGTCCA
TACAGAGTCAGTATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTCAGGGT
AATGCACCAAATTATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTGCTGTT
GATTTGCAACCACCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGATGAA
GACAATTACAGTCAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAAC
CGCATGGTTGAAAATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGC
GGAGTCAATATGTTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTC
AATCTTAAGAAACAAGGCAAATTGTAA

>g7294.t56 Gene=g7294 Length=476
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFILFWDFLTLRPESTHQVMFLFADRGIPDGFR
HMNGYGSHTFKTVNDKGESFWVKFHYKTAQGVKNLDIKKAEELAGTNPDYALQDLFDAIG
RGDFPQWNFFIQVMTNEQAEQYKWNPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVE
QIAFCPSNMVPGIEPSPDKMLQGRLFSYVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDG
PMCFDSQGNAPNYYPNSFGGPEPIKRAVDLQPPYKVSGEVFRYDSADEDNYSQATLFWNN
VLDEPARNRMVENIAGHLVNAAEFIQERGVNMFSNVSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7294.t56 CDD cd08156 catalase_clade_3 63 468 0.0
11 g7294.t56 Gene3D G3DSA:2.40.180.10 Catalase HpII 16 151 2.2E-67
10 g7294.t56 Gene3D G3DSA:2.40.180.10 Catalase HpII 152 475 1.2E-146
4 g7294.t56 PANTHER PTHR11465:SF9 CATALASE 20 472 1.3E-213
5 g7294.t56 PANTHER PTHR11465 CATALASE 20 472 1.3E-213
12 g7294.t56 PIRSF PIRSF038928 Catalase_clade1-3 10 151 2.2E-62
13 g7294.t56 PIRSF PIRSF038928 Catalase_clade1-3 151 474 7.7E-129
8 g7294.t56 PRINTS PR00067 Catalase signature 36 59 5.6E-38
7 g7294.t56 PRINTS PR00067 Catalase signature 279 306 5.6E-38
6 g7294.t56 PRINTS PR00067 Catalase signature 311 337 5.6E-38
3 g7294.t56 Pfam PF00199 Catalase 24 150 2.1E-63
2 g7294.t56 Pfam PF00199 Catalase 152 379 9.1E-110
1 g7294.t56 Pfam PF06628 Catalase-related immune-responsive 406 468 1.5E-18
17 g7294.t56 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
16 g7294.t56 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 324 332 -
18 g7294.t56 ProSiteProfiles PS51402 catalase family profile. 19 474 74.077
15 g7294.t56 SMART SM01060 Catalase_2 23 382 1.1E-247
9 g7294.t56 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 472 2.88E-193

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0042744 hydrogen peroxide catabolic process BP
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values