Gene loci information

Transcript annotation

  • This transcript has been annotated as Catalase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7294 g7294.t69 TSS g7294.t69 22738599 22738599
chr_2 g7294 g7294.t69 isoform g7294.t69 22738614 22743284
chr_2 g7294 g7294.t69 exon g7294.t69.exon1 22738614 22738668
chr_2 g7294 g7294.t69 exon g7294.t69.exon2 22738732 22738820
chr_2 g7294 g7294.t69 cds g7294.t69.CDS1 22738773 22738820
chr_2 g7294 g7294.t69 exon g7294.t69.exon3 22741499 22741756
chr_2 g7294 g7294.t69 cds g7294.t69.CDS2 22741499 22741756
chr_2 g7294 g7294.t69 exon g7294.t69.exon4 22741834 22741861
chr_2 g7294 g7294.t69 cds g7294.t69.CDS3 22741834 22741861
chr_2 g7294 g7294.t69 exon g7294.t69.exon5 22741922 22742038
chr_2 g7294 g7294.t69 cds g7294.t69.CDS4 22741922 22742038
chr_2 g7294 g7294.t69 exon g7294.t69.exon6 22742132 22742386
chr_2 g7294 g7294.t69 cds g7294.t69.CDS5 22742132 22742386
chr_2 g7294 g7294.t69 exon g7294.t69.exon7 22742534 22743284
chr_2 g7294 g7294.t69 cds g7294.t69.CDS6 22742534 22743186
chr_2 g7294 g7294.t69 TTS g7294.t69 22743323 22743323

Sequences

>g7294.t69 Gene=g7294 Length=1553
AGTTTTCGTACAATTAACAACAAAGAGTGGAATAACATTTTTTCAGCTGATAATTTGTGT
GTGATTTGAAGTGAACAAAAGTGAAAAATAACAAAAATGTCGGCTTCTCAAAATCAACTT
AGTGACTTTAAAAAATCACTTAAGAATGGCCCAGCTGTTGCTACTGTTGGAAATGGTGCA
CCAATCGGTGTTAAGACAGCAACACAAACTGTTGGACCACGTGGCCCAGCTCTCTTGCAA
GATGCAAATTACATCGATGAGATGAGCCACTTTGATCGTGAAAGAGTTCCAGAACGTGTT
GTCCATGCCAAAGGTGCTGGTGCTTTTGGATATTTTGAAGTTACTCATGATATTACAAAA
TACTGTGCTGCAAAAGTCTTTGAAAAAGTTGGAAAACGCACTCCTATTGCTGTGCGATTC
TCAACTGTTGGTGGTGAAAGTGGATCAGCTGATACTGTTCGTGATCCTCGTGGTTTTGCT
GTTAAATTCTACACTGATGAAGGCATTTGGGATTTGGTTGGCAATAACACACCGATTTTC
TTCATTCGTGATCCAATCTTGTTCCCAAGTTTCATTCACACACAAAAGAGAAATCCACAA
ACACACTTGAAAGACCCCAACATGTTCTGGGACTTCCTTACTCTTCGTCCAGAATCAACT
CATCAAGTTATGTTTTTGTTTGCTGATCGTGGCATTCCAGACGGTTTTCGTCATATGAAT
GGTTATGGTTCACATACATTTAAGACTGTTAATGACAAGGGTGAATCATTCTGGGTTAAA
TTCCATTACAAGACTGCACAAGAGCAATACAAATGGAATCCATTTGATGTCACTAAAGTT
TGGTCACACAAAGATTTCCCATTGATTCCAGTTGGTCGAATGGTTTTGGATAGAAATCCA
AACAATTACTTTGCTGAAGTTGAACAAATTGCATTTTGTCCATCAAATATGGTGCCTGGT
ATTGAACCATCACCAGATAAGATGTTGCAAGGTCGTCTTTTCTCATATGTCGACACTCAT
CGTCATCGTTTGGGTGCAAATTATCAAATGTTACCAGTTAACTGTCCATACAGAGTCAGT
ATCAAGAACTATCAACGCGATGGTCCAATGTGCTTCGACAGTCAGGGTAATGCACCAAAT
TATTATCCAAACTCATTCGGTGGACCAGAACCAATTAAACGTGCTGTTGATTTGCAACCA
CCATACAAAGTTTCTGGCGAAGTTTTCCGTTATGATAGTGCTGATGAAGACAATTACAGT
CAAGCAACTCTTTTCTGGAATAATGTTTTGGATGAACCTGCAAGAAACCGCATGGTTGAA
AATATTGCTGGACATCTTGTTAATGCTGCAGAATTTATTCAAGAACGCGGAGTCAATATG
TTCTCAAATGTATCTTCTGATTTCGGTCAAAAATTGAGAGAAGCACTCAATCTTAAGAAA
CAAGGCAAATTGTAAAAATATTTTTGTTATTATTCCATTTTTTTATTATATTTTGGGACA
ATTTTGGGATAATCATTTTTATATTTTATCCTCTCTTTCTTGGCATATGAAAA

>g7294.t69 Gene=g7294 Length=452
MSASQNQLSDFKKSLKNGPAVATVGNGAPIGVKTATQTVGPRGPALLQDANYIDEMSHFD
RERVPERVVHAKGAGAFGYFEVTHDITKYCAAKVFEKVGKRTPIAVRFSTVGGESGSADT
VRDPRGFAVKFYTDEGIWDLVGNNTPIFFIRDPILFPSFIHTQKRNPQTHLKDPNMFWDF
LTLRPESTHQVMFLFADRGIPDGFRHMNGYGSHTFKTVNDKGESFWVKFHYKTAQEQYKW
NPFDVTKVWSHKDFPLIPVGRMVLDRNPNNYFAEVEQIAFCPSNMVPGIEPSPDKMLQGR
LFSYVDTHRHRLGANYQMLPVNCPYRVSIKNYQRDGPMCFDSQGNAPNYYPNSFGGPEPI
KRAVDLQPPYKVSGEVFRYDSADEDNYSQATLFWNNVLDEPARNRMVENIAGHLVNAAEF
IQERGVNMFSNVSSDFGQKLREALNLKKQGKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7294.t69 Gene3D G3DSA:2.40.180.10 Catalase HpII 17 235 1.5E-115
13 g7294.t69 Gene3D G3DSA:2.40.180.10 Catalase HpII 236 449 2.3E-94
5 g7294.t69 PANTHER PTHR11465:SF9 CATALASE 20 235 2.5E-209
7 g7294.t69 PANTHER PTHR11465 CATALASE 20 235 2.5E-209
4 g7294.t69 PANTHER PTHR11465:SF9 CATALASE 236 448 2.5E-209
6 g7294.t69 PANTHER PTHR11465 CATALASE 236 448 2.5E-209
16 g7294.t69 PIRSF PIRSF038928 Catalase_clade1-3 10 237 6.4E-111
15 g7294.t69 PIRSF PIRSF038928 Catalase_clade1-3 234 450 1.2E-73
11 g7294.t69 PRINTS PR00067 Catalase signature 36 59 6.2E-40
10 g7294.t69 PRINTS PR00067 Catalase signature 99 117 6.2E-40
9 g7294.t69 PRINTS PR00067 Catalase signature 120 137 6.2E-40
8 g7294.t69 PRINTS PR00067 Catalase signature 139 157 6.2E-40
3 g7294.t69 Pfam PF00199 Catalase 24 236 1.2E-110
2 g7294.t69 Pfam PF00199 Catalase 235 355 9.6E-57
1 g7294.t69 Pfam PF06628 Catalase-related immune-responsive 382 444 1.4E-18
18 g7294.t69 ProSitePatterns PS00438 Catalase proximal active site signature. 59 75 -
17 g7294.t69 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 300 308 -
20 g7294.t69 ProSiteProfiles PS51402 catalase family profile. 19 450 65.109
19 g7294.t69 SMART SM01060 Catalase_2 23 358 1.2E-227
12 g7294.t69 SUPERFAMILY SSF56634 Heme-dependent catalase-like 15 448 1.06E-185

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004096 catalase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values