Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7319 g7319.t1 TSS g7319.t1 22887090 22887090
chr_2 g7319 g7319.t1 isoform g7319.t1 22887872 22893658
chr_2 g7319 g7319.t1 exon g7319.t1.exon1 22887872 22888235
chr_2 g7319 g7319.t1 cds g7319.t1.CDS1 22887872 22888235
chr_2 g7319 g7319.t1 exon g7319.t1.exon2 22888770 22889962
chr_2 g7319 g7319.t1 cds g7319.t1.CDS2 22888770 22889962
chr_2 g7319 g7319.t1 exon g7319.t1.exon3 22890066 22890465
chr_2 g7319 g7319.t1 cds g7319.t1.CDS3 22890066 22890465
chr_2 g7319 g7319.t1 exon g7319.t1.exon4 22890591 22891024
chr_2 g7319 g7319.t1 cds g7319.t1.CDS4 22890591 22891024
chr_2 g7319 g7319.t1 exon g7319.t1.exon5 22892481 22892786
chr_2 g7319 g7319.t1 cds g7319.t1.CDS5 22892481 22892786
chr_2 g7319 g7319.t1 exon g7319.t1.exon6 22892843 22893658
chr_2 g7319 g7319.t1 cds g7319.t1.CDS6 22892843 22893658
chr_2 g7319 g7319.t1 TTS g7319.t1 22893719 22893719

Sequences

>g7319.t1 Gene=g7319 Length=3513
ATGTCTTCAAATCATGGATTAAGATTTTCACAATTTACATCGTCAAGTAATGTCGGTAAA
AAGATAATGTCTGCAGCACAACAACCACAACAACAAACACCTGCTTTACCTGTAAGACAG
AGAAAATCGGCAACACCAACAAACACAAATATCCCAGTGCTTGTAAGAGATCAAAAAACA
GCACCACAGGAAATTGTGAAAAATTCCAATTTTTCTGATACCGATGATGAGCAAGATTAT
TTTGAAGATGAAACAGATGTGAATCTATCAAAGGAGGAGAGATTTGTTTTGCTTCAACCG
CGAGCTGAACCACAAGGTCAAGAAAATTTATCGGGAAATGTCACTCCAGTAAATGACAAT
CAACAACTAAACATTTACGAGAAAGTTTCATCAAGTCAACAGCAGCAGCAACAACCGACA
GCGACAAAAGTTCGTTATTCAAGTGCATCGACGGATGCGACAAACACTCCTCCACCACGT
TTCACAAATCGAAGTGTATCAGTTGATTTGAGAAGTCATAATGATAACAGCGGAAGTCAA
CGAAATTCATTGATCTTGCAACAACAACAACAGCAGCATTCAAATAGAAATTCAATGGAT
CATTCAAATCGATCTTCATTGGATGTTTCACAATCGAGTTATTCTACACTTATAATTCAT
GACAATAATGAATCGAATCCTGGTTTAATTAAGCATGATCTTTATTTTATTAATTCATCG
CCATCACCACCAAATTATAATAAAAAGGACAAAAGTTCACCACGGTCACTTGGCAATTAT
GCTGGTCACTTGAGCACAAATGAAGGAATGACACCAATCACTGAAAATGAACAACAATAT
CTCAATCAGAGCTATGTACTCAAGCATTTAGCAAAAGAAGTTAAAATTCCAAATGTCATC
GATTCAACACGCGATTCAGGCGTGTCAGAAAACAATTCAAGTCATCATCATCAGCAACAT
TGGTCAAGTGAGAATGTAAGCAGTGGAAGAAGCAAAAGTAAATCACAACCAGATCTGACA
AAGTTGAGTGGCGATGCAGAAAGTCACGAAAGCAACAATTCTACCACAAATACTCTTAAT
TTTAATGATTTTGAGCAGTTGGAAGTTGAAAATACAAAATTGCGTGAACAACTTAATAAT
TGTCTTATGAAAGTGGCAAAATCTCAAAAATTAGAGCAAGAAGTTGCAAATATTTATCGA
GTGCATGAAGAATTAGTTCAAAGTTGTGAGAGACGTGAACGATTGGAAAAAACTGCACGA
ACACGATTACAAAGTGATTGCAGAAGATTTCAGGAATTGAATAGAGCTTTAAGAGAACAA
GTTGAAACATTACAACAACAACTTTTGATTGCAACGACCCAACAGCAACAGCAATTGGCA
AATACTGGAAGAACTCAGCAAGATTTGCTCATTACTCAGTTGATACAGCAAAATAAAGAG
CTCGTTGATGCTAATAAGCGGCAATATATTGAAATTCAAGCTCAAAGTGCCACACTCGAA
GAGCAACGTGTTCATATTAATGTGCTAGATTCGGCATTGAAACGATTAGAGGAAGAGGTT
CGACAGAAGCAACTCTATCAAAAACAACTTCAAACATTAATCAGCGCAAATGAGCGTCGC
GATAAATTACGACTTGAACTTGAAAATGAATTGTCGAAAGATTTGAATCGTACGCCCACA
ACTGAGGCAAATTTAAAGTGGCAATTACAAGAGAAAAATAATCAAATAATGCGTCTAGAA
GCTGAGTGTTCAAAGTTTGATCAACGAAATATGGAAGATGAAAGAAAATTGGCAATGGAA
GGAGCAACTGGTGGTCAAGATACTGATAGAATAATTTCAGATGCACACACTGCACAGAGA
AAAGTTAATGAATTACAAACACGATTAAAAATGGTTGAAAATCGTTTGGCTGAGAAAGAA
AAGGAAGATATTTTGAGACAAATACAAGAACAGAAATTATATTCAGCAAATCCAGCTTAT
AATCTGTTAAGTAACAATGACTACACTCCATCATCATCATCAATTGTATCTTCTACGCCT
ACAACTCCATATTATAATGCTACGAATTACGAAAATTTGATGCCATCGGCAAACAGCTCA
AAAACTGTTTCAGCTACATCAAATTCATCGTTCGATGCATTACTTGCTGGAGCTTATAGC
GGTCTTTATCATCAGCAAAATTATGGACCGAAATTATCTTCAGTTCCACCAAATACTGGA
ATTTCGCCAAATACATCTTGCTCATCAACAAACACAATGCAACACAAACATCAAGAACCT
TCCATCACATCATCATCAAGTGCATCAAATTATCTTAACTACGATCTAGATGAACAGAGA
AAATCCATTGACGATCAATTGAAAAAACTAGATAATCAGCTATTAACGAAAATATGCTGT
TTTCCTAGTAATCTTTTGAGTAAGAAGCCAGTTTTATCTGAAGAAATGACAGTCTTGACA
TCATCTAACAACAACAGTGATGCTTTTTTACAAAACTTGGCGCACATGAGAAATAGGGAA
ACCACACCAGCAAATTCAAGCAATTCTGGAAAGAATGAGGAAATTGTTTTGCTTGAAAAG
CAAGGCAGATCTTCACAAAAATTGAGAGGAAATAACTTGGCACAAATTTCATCGACAATT
GGTCAAAATATGAATGATATCAGCAATATTGGAAATCAATCAAGTGAATCATCAAAACTA
CCAAAAATTCTTTTGCCACCACGAAAAGATCGACAATCATCAGCACCACCTTCTGCTCTA
CCACGACCACCTAAGTCACTAAAACCACCAAAAAAAATCGAATATGGTAGGTTAAGTGAA
ACTGACTCAAATAAATCCAACAGTAAAAGCGAATACGAAATGAAAACGTCAAGTTTAAAG
CGAAATCAATCGCCAGTCACATCAACAGGTTCAAAGAACTTCGTTGATATCAAATCAGAA
CTTCAAATGGCATTAAATTCAACAAAAAATAATCCGAAAAATTATGGCACTATCAAAAGC
GACACGACTAATAACATAACTAAAATTTATTATTCTAACAAACCGGACTTTTTGTCTACC
AAAAATTATCAGCGACTACCAGATTCACCGTCCTCTGACAAGCGTTTTATGGCGAGTGGT
AAGAAAATTACTTTTATGCGTCAATCACCACAACAGCAACATCAGTCACGTGAAGGCTCA
GTTTCAAGTGGATCAAATTCACGTTCAAGTCCAAATAAAATCCAGCCTGATAATTCGACT
TATCAACAATTAACGCAACAGCAACAACGTTCAAGAACTCGAACTCCACCAAAGTATTTA
AATCTAAATCCGAACATTGCAAGTGGTGGAAAATTAAATTACATCAGTAGCAGTAGTAAT
AGCTCACCAACAAAGCCTAATTTGCCAAGTTCTAGTGTACTGCATCATGCTTTTCAAACA
CATGCACAAAGTCCAGACAATTGGAAGCAACATCAGCGTGCAAACAGTGGACGAAGTACT
AGCGGTGAAAATAAATATCGCATTCAATTTTGA

>g7319.t1 Gene=g7319 Length=1170
MSSNHGLRFSQFTSSSNVGKKIMSAAQQPQQQTPALPVRQRKSATPTNTNIPVLVRDQKT
APQEIVKNSNFSDTDDEQDYFEDETDVNLSKEERFVLLQPRAEPQGQENLSGNVTPVNDN
QQLNIYEKVSSSQQQQQQPTATKVRYSSASTDATNTPPPRFTNRSVSVDLRSHNDNSGSQ
RNSLILQQQQQQHSNRNSMDHSNRSSLDVSQSSYSTLIIHDNNESNPGLIKHDLYFINSS
PSPPNYNKKDKSSPRSLGNYAGHLSTNEGMTPITENEQQYLNQSYVLKHLAKEVKIPNVI
DSTRDSGVSENNSSHHHQQHWSSENVSSGRSKSKSQPDLTKLSGDAESHESNNSTTNTLN
FNDFEQLEVENTKLREQLNNCLMKVAKSQKLEQEVANIYRVHEELVQSCERRERLEKTAR
TRLQSDCRRFQELNRALREQVETLQQQLLIATTQQQQQLANTGRTQQDLLITQLIQQNKE
LVDANKRQYIEIQAQSATLEEQRVHINVLDSALKRLEEEVRQKQLYQKQLQTLISANERR
DKLRLELENELSKDLNRTPTTEANLKWQLQEKNNQIMRLEAECSKFDQRNMEDERKLAME
GATGGQDTDRIISDAHTAQRKVNELQTRLKMVENRLAEKEKEDILRQIQEQKLYSANPAY
NLLSNNDYTPSSSSIVSSTPTTPYYNATNYENLMPSANSSKTVSATSNSSFDALLAGAYS
GLYHQQNYGPKLSSVPPNTGISPNTSCSSTNTMQHKHQEPSITSSSSASNYLNYDLDEQR
KSIDDQLKKLDNQLLTKICCFPSNLLSKKPVLSEEMTVLTSSNNNSDAFLQNLAHMRNRE
TTPANSSNSGKNEEIVLLEKQGRSSQKLRGNNLAQISSTIGQNMNDISNIGNQSSESSKL
PKILLPPRKDRQSSAPPSALPRPPKSLKPPKKIEYGRLSETDSNKSNSKSEYEMKTSSLK
RNQSPVTSTGSKNFVDIKSELQMALNSTKNNPKNYGTIKSDTTNNITKIYYSNKPDFLST
KNYQRLPDSPSSDKRFMASGKKITFMRQSPQQQHQSREGSVSSGSNSRSSPNKIQPDNST
YQQLTQQQQRSRTRTPPKYLNLNPNIASGGKLNYISSSSNSSPTKPNLPSSSVLHHAFQT
HAQSPDNWKQHQRANSGRSTSGENKYRIQF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g7319.t1 Coils Coil Coil 364 384 -
16 g7319.t1 Coils Coil Coil 420 454 -
15 g7319.t1 Coils Coil Coil 499 553 -
14 g7319.t1 Coils Coil Coil 562 596 -
13 g7319.t1 Coils Coil Coil 615 642 -
8 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 88 -
11 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 69 -
3 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 128 209 -
10 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 305 359 -
12 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 748 767 -
7 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 907 971 -
5 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 927 949 -
6 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 950 971 -
4 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 1046 1101 -
9 g7319.t1 MobiDBLite mobidb-lite consensus disorder prediction 1117 1170 -
1 g7319.t1 PANTHER PTHR14826 ANGIOMOTIN 87 960 6.7E-88
2 g7319.t1 PANTHER PTHR14826:SF14 AGAP007535-PA 87 960 6.7E-88

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values