General information for g7319.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7319 is located on chr_2: 22890066..22893658 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7319 | g7319.t3 | isoform | g7319.t3 | 22886704 | 22891024 |
| chr_2 | g7319 | g7319.t3 | exon | g7319.t3.exon1 | 22886704 | 22887164 |
| chr_2 | g7319 | g7319.t3 | exon | g7319.t3.exon2 | 22887711 | 22888235 |
| chr_2 | g7319 | g7319.t3 | cds | g7319.t3.CDS1 | 22887872 | 22888235 |
| chr_2 | g7319 | g7319.t3 | exon | g7319.t3.exon3 | 22888770 | 22889962 |
| chr_2 | g7319 | g7319.t3 | cds | g7319.t3.CDS2 | 22888770 | 22889962 |
| chr_2 | g7319 | g7319.t3 | exon | g7319.t3.exon4 | 22890066 | 22890465 |
| chr_2 | g7319 | g7319.t3 | cds | g7319.t3.CDS3 | 22890066 | 22890465 |
| chr_2 | g7319 | g7319.t3 | exon | g7319.t3.exon5 | 22890591 | 22891024 |
| chr_2 | g7319 | g7319.t3 | cds | g7319.t3.CDS4 | 22890591 | 22891024 |
| chr_2 | g7319 | g7319.t3 | TTS | g7319.t3 | 22891731 | 22891731 |
| chr_2 | g7319 | g7319.t3 | TSS | g7319.t3 | NA | NA |
Sequences
>g7319.t3 Gene=g7319 Length=3013
CAATTTTATTAAATCAACTAAAGAAAACAAAGCTTCCAATAATTATTTTTGTGAATGCGG
CTTAAATTTCCAATATTTTACATTCTTTTCTATATTTGTTAAGAGAAATTCAAACATTTA
AAATTTTTAAAACAAAATAATTCGTAAAAAAATTTTTTACTAAAAATATTTAGAATTATC
AAGAAAAAATAAATTTTTAAATAAATTTTGAAATTTTAATTAAAAATTTCCCATGTAAAT
TGTTAAACCCTGATGCGCTTTTTTCTCAAAACTACATCTATTTTGCAATAATCATTTAAC
TTTCTTCCATTTTTTAAGTGAAATAACTCATTATTTCAAAATACAAAACCAAAATCACTA
CTGCCGCTGTTGAGGAATTTCTGAAATAGATTTAACATATATTGCAAAACGAAATATTAT
ATCGCTCACTAATTTATAATATTTTAATATTCCAAACAACTATGGAAACATAAATGTATT
GGAGCTTTACTAATAAAAAACAACAACAATTAATGACGCATCAAATGTAAACAGTGCCTT
AACAGTAAACAAAATTTTTTTATCAATAAAAAAAGTGCCTTAAAATTAAGCCAAAATAAA
CAACAAAATCGAAACTTAAAAAATGTCTTCAAATCATGGATTAAGATTTTCACAATTTAC
ATCGTCAAGTAATGTCGGTAAAAAGATAATGTCTGCAGCACAACAACCACAACAACAAAC
ACCTGCTTTACCTGTAAGACAGAGAAAATCGGCAACACCAACAAACACAAATATCCCAGT
GCTTGTAAGAGATCAAAAAACAGCACCACAGGAAATTGTGAAAAATTCCAATTTTTCTGA
TACCGATGATGAGCAAGATTATTTTGAAGATGAAACAGATGTGAATCTATCAAAGGAGGA
GAGATTTGTTTTGCTTCAACCGCGAGCTGAACCACAAGGTCAAGAAAATTTATCGGGAAA
TGTCACTCCAGTAAATGACAATCAACAACTAAACATTTACGAGAAAGTTTCATCAAGTCA
ACAGCAGCAGCAACAACCGACAGCGACAAAAGTTCGTTATTCAAGTGCATCGACGGATGC
GACAAACACTCCTCCACCACGTTTCACAAATCGAAGTGTATCAGTTGATTTGAGAAGTCA
TAATGATAACAGCGGAAGTCAACGAAATTCATTGATCTTGCAACAACAACAACAGCAGCA
TTCAAATAGAAATTCAATGGATCATTCAAATCGATCTTCATTGGATGTTTCACAATCGAG
TTATTCTACACTTATAATTCATGACAATAATGAATCGAATCCTGGTTTAATTAAGCATGA
TCTTTATTTTATTAATTCATCGCCATCACCACCAAATTATAATAAAAAGGACAAAAGTTC
ACCACGGTCACTTGGCAATTATGCTGGTCACTTGAGCACAAATGAAGGAATGACACCAAT
CACTGAAAATGAACAACAATATCTCAATCAGAGCTATGTACTCAAGCATTTAGCAAAAGA
AGTTAAAATTCCAAATGTCATCGATTCAACACGCGATTCAGGCGTGTCAGAAAACAATTC
AAGTCATCATCATCAGCAACATTGGTCAAGTGAGAATGTAAGCAGTGGAAGAAGCAAAAG
TAAATCACAACCAGATCTGACAAAGTTGAGTGGCGATGCAGAAAGTCACGAAAGCAACAA
TTCTACCACAAATACTCTTAATTTTAATGATTTTGAGCAGTTGGAAGTTGAAAATACAAA
ATTGCGTGAACAACTTAATAATTGTCTTATGAAAGTGGCAAAATCTCAAAAATTAGAGCA
AGAAGTTGCAAATATTTATCGAGTGCATGAAGAATTAGTTCAAAGTTGTGAGAGACGTGA
ACGATTGGAAAAAACTGCACGAACACGATTACAAAGTGATTGCAGAAGATTTCAGGAATT
GAATAGAGCTTTAAGAGAACAAGTTGAAACATTACAACAACAACTTTTGATTGCAACGAC
CCAACAGCAACAGCAATTGGCAAATACTGGAAGAACTCAGCAAGATTTGCTCATTACTCA
GTTGATACAGCAAAATAAAGAGCTCGTTGATGCTAATAAGCGGCAATATATTGAAATTCA
AGCTCAAAGTGCCACACTCGAAGAGCAACGTGTTCATATTAATGTGCTAGATTCGGCATT
GAAACGATTAGAGGAAGAGGTTCGACAGAAGCAACTCTATCAAAAACAACTTCAAACATT
AATCAGCGCAAATGAGCGTCGCGATAAATTACGACTTGAACTTGAAAATGAATTGTCGAA
AGATTTGAATCGTACGCCCACAACTGAGGCAAATTTAAAGTGGCAATTACAAGAGAAAAA
TAATCAAATAATGCGTCTAGAAGCTGAGTGTTCAAAGTTTGATCAACGAAATATGGAAGA
TGAAAGAAAATTGGCAATGGAAGGAGCAACTGGTGGTCAAGATACTGATAGAATAATTTC
AGATGCACACACTGCACAGAGAAAAGTTAATGAATTACAAACACGATTAAAAATGGTTGA
AAATCGTTTGGCTGAGAAAGAAAAGGAAGATATTTTGAGACAAATACAAGAACAGAAATT
ATATTCAGCAAATCCAGCTTATAATCTGTTAAGTAACAATGACTACACTCCATCATCATC
ATCAATTGTATCTTCTACGCCTACAACTCCATATTATAATGCTACGAATTACGAAAATTT
GATGCCATCGGCAAACAGCTCAAAAACTGTTTCAGCTACATCAAATTCATCGTTCGATGC
ATTACTTGCTGGAGCTTATAGCGGTCTTTATCATCAGCAAAATTATGGACCGAAATTATC
TTCAGTTCCACCAAATACTGGAATTTCGCCAAATACATCTTGCTCATCAACAAACACAAT
GCAACACAAACATCAAGAACCTTCCATCACATCATCATCAAGTGCATCAAATTATCTTAA
CTACGATCTAGATGAACAGAGAAAATCCATTGACGATCAATTGAAAAAACTAGATAATCA
GCTATTAACGAAA
>g7319.t3 Gene=g7319 Length=797
MSSNHGLRFSQFTSSSNVGKKIMSAAQQPQQQTPALPVRQRKSATPTNTNIPVLVRDQKT
APQEIVKNSNFSDTDDEQDYFEDETDVNLSKEERFVLLQPRAEPQGQENLSGNVTPVNDN
QQLNIYEKVSSSQQQQQQPTATKVRYSSASTDATNTPPPRFTNRSVSVDLRSHNDNSGSQ
RNSLILQQQQQQHSNRNSMDHSNRSSLDVSQSSYSTLIIHDNNESNPGLIKHDLYFINSS
PSPPNYNKKDKSSPRSLGNYAGHLSTNEGMTPITENEQQYLNQSYVLKHLAKEVKIPNVI
DSTRDSGVSENNSSHHHQQHWSSENVSSGRSKSKSQPDLTKLSGDAESHESNNSTTNTLN
FNDFEQLEVENTKLREQLNNCLMKVAKSQKLEQEVANIYRVHEELVQSCERRERLEKTAR
TRLQSDCRRFQELNRALREQVETLQQQLLIATTQQQQQLANTGRTQQDLLITQLIQQNKE
LVDANKRQYIEIQAQSATLEEQRVHINVLDSALKRLEEEVRQKQLYQKQLQTLISANERR
DKLRLELENELSKDLNRTPTTEANLKWQLQEKNNQIMRLEAECSKFDQRNMEDERKLAME
GATGGQDTDRIISDAHTAQRKVNELQTRLKMVENRLAEKEKEDILRQIQEQKLYSANPAY
NLLSNNDYTPSSSSIVSSTPTTPYYNATNYENLMPSANSSKTVSATSNSSFDALLAGAYS
GLYHQQNYGPKLSSVPPNTGISPNTSCSSTNTMQHKHQEPSITSSSSASNYLNYDLDEQR
KSIDDQLKKLDNQLLTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7319.t3 | Coils | Coil | Coil | 364 | 384 | - |
| 11 | g7319.t3 | Coils | Coil | Coil | 420 | 454 | - |
| 10 | g7319.t3 | Coils | Coil | Coil | 499 | 553 | - |
| 9 | g7319.t3 | Coils | Coil | Coil | 562 | 596 | - |
| 8 | g7319.t3 | Coils | Coil | Coil | 615 | 642 | - |
| 4 | g7319.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - |
| 7 | g7319.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - |
| 3 | g7319.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 209 | - |
| 5 | g7319.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 359 | - |
| 6 | g7319.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 768 | - |
| 1 | g7319.t3 | PANTHER | PTHR14826 | ANGIOMOTIN | 86 | 769 | 7.5E-94 |
| 2 | g7319.t3 | PANTHER | PTHR14826:SF14 | AGAP007535-PA | 86 | 769 | 7.5E-94 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06104 (angiomotin like)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
