General information for g7319.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7319 is located on chr_2: 22890066..22893658 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7319 | g7319.t5 | isoform | g7319.t5 | 22890066 | 22891734 |
| chr_2 | g7319 | g7319.t5 | exon | g7319.t5.exon1 | 22890066 | 22890465 |
| chr_2 | g7319 | g7319.t5 | cds | g7319.t5.CDS1 | 22890237 | 22890465 |
| chr_2 | g7319 | g7319.t5 | exon | g7319.t5.exon2 | 22890591 | 22891734 |
| chr_2 | g7319 | g7319.t5 | cds | g7319.t5.CDS2 | 22890591 | 22891303 |
| chr_2 | g7319 | g7319.t5 | TTS | g7319.t5 | 22891731 | 22891731 |
| chr_2 | g7319 | g7319.t5 | TSS | g7319.t5 | NA | NA |
Sequences
>g7319.t5 Gene=g7319 Length=1544
GTTCGACAGAAGCAACTCTATCAAAAACAACTTCAAACATTAATCAGCGCAAATGAGCGT
CGCGATAAATTACGACTTGAACTTGAAAATGAATTGTCGAAAGATTTGAATCGTACGCCC
ACAACTGAGGCAAATTTAAAGTGGCAATTACAAGAGAAAAATAATCAAATAATGCGTCTA
GAAGCTGAGTGTTCAAAGTTTGATCAACGAAATATGGAAGATGAAAGAAAATTGGCAATG
GAAGGAGCAACTGGTGGTCAAGATACTGATAGAATAATTTCAGATGCACACACTGCACAG
AGAAAAGTTAATGAATTACAAACACGATTAAAAATGGTTGAAAATCGTTTGGCTGAGAAA
GAAAAGGAAGATATTTTGAGACAAATACAAGAACAGAAATTATATTCAGCAAATCCAGCT
TATAATCTGTTAAGTAACAATGACTACACTCCATCATCATCATCAATTGTATCTTCTACG
CCTACAACTCCATATTATAATGCTACGAATTACGAAAATTTGATGCCATCGGCAAACAGC
TCAAAAACTGTTTCAGCTACATCAAATTCATCGTTCGATGCATTACTTGCTGGAGCTTAT
AGCGGTCTTTATCATCAGCAAAATTATGGACCGAAATTATCTTCAGTTCCACCAAATACT
GGAATTTCGCCAAATACATCTTGCTCATCAACAAACACAATGCAACACAAACATCAAGAA
CCTTCCATCACATCATCATCAAGTGCATCAAATTATCTTAACTACGATCTAGATGAACAG
AGAAAATCCATTGACGATCAATTGAAAAAACTAGATAATCAGCTATTAACGAAAGTAAGT
GAATTAACCTTAATACAGCAACAGCATATTCAATTACAGCAGCAACAAAATCGAAACTTA
AAATCGAAGAATGCTGCACTAATTCATAATTCTCGTGCAAGTTCATTAAGTTTATGCTCG
AGTCCAGTAACTGTCGCAACGAATCGTTCTAGTATTTCTAAAAATGTTAATGTTGCTAAC
AATTTAACGGCACAGAATGCATTCTCGAATTCAATGCAGTCTCTGCCAATTGATTGTACA
CGCGATGATGAGGAACAGGAAGTTTTTTACTAGAGAGATGGCATGAATAGATAATTCTCA
TTTTTTACAATTTTCTATAAACGTTCAAGGACGTTAAAAGTGATTGTAAAAAATGAAACA
ATAGAATAAAAAAGGAAGACTGACAAATTTGCGATGTGGATAAAAGTTGGTATCATTTAA
AAATTTTATTTTATTCTAACTTGTTCCTCTTGTGTGCTATTTAATTAACATAAATAAAAT
AACCACAAAATGAGCTTTTGAGAAGCTTTTTTTTAAAATACCAATTAAAAATGATTAATA
TTACTAATTTAATTATACGTAAATTATCTTTAAAAAATCCACCTGATATATGAAATTGAG
ATTTATTTTTGTTTTGCCTTTTTTCCTACCCCTTACACAAATGTCACTTACATACTTTAA
AACAAATGCATTAATAAATTGAAAATGATATTTTTGTGACAAAA
>g7319.t5 Gene=g7319 Length=313
MRLEAECSKFDQRNMEDERKLAMEGATGGQDTDRIISDAHTAQRKVNELQTRLKMVENRL
AEKEKEDILRQIQEQKLYSANPAYNLLSNNDYTPSSSSIVSSTPTTPYYNATNYENLMPS
ANSSKTVSATSNSSFDALLAGAYSGLYHQQNYGPKLSSVPPNTGISPNTSCSSTNTMQHK
HQEPSITSSSSASNYLNYDLDEQRKSIDDQLKKLDNQLLTKVSELTLIQQQHIQLQQQQN
RNLKSKNAALIHNSRASSLSLCSSPVTVATNRSSISKNVNVANNLTAQNAFSNSMQSLPI
DCTRDDEEQEVFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7319.t5 | Coils | Coil | Coil | 39 | 66 | - |
| 2 | g7319.t5 | Coils | Coil | Coil | 233 | 253 | - |
| 1 | g7319.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
