Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglucomutase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7326 g7326.t3 isoform g7326.t3 22960934 22965208
chr_2 g7326 g7326.t3 exon g7326.t3.exon1 22960934 22961056
chr_2 g7326 g7326.t3 exon g7326.t3.exon2 22962771 22963837
chr_2 g7326 g7326.t3 exon g7326.t3.exon3 22963986 22964212
chr_2 g7326 g7326.t3 cds g7326.t3.CDS1 22964006 22964212
chr_2 g7326 g7326.t3 exon g7326.t3.exon4 22964266 22964492
chr_2 g7326 g7326.t3 cds g7326.t3.CDS2 22964266 22964492
chr_2 g7326 g7326.t3 exon g7326.t3.exon5 22964554 22965208
chr_2 g7326 g7326.t3 cds g7326.t3.CDS3 22964554 22965208
chr_2 g7326 g7326.t3 TTS g7326.t3 22965300 22965300
chr_2 g7326 g7326.t3 TSS g7326.t3 NA NA

Sequences

>g7326.t3 Gene=g7326 Length=2299
ACACTCCGTATTGATATTATTTGCATTTAATACAGCATCGATTTTCGTTTTAGTGTCGGT
TGAAGAATGACTTAACAATTTCTCAAATGCATCACGATTTTCCCGAAGTGCTTTGATAAT
CAGAAAATAAATATTTCAAAAACAAAACAGAATTTGCGCGCCAAAAAAAAAGTATAAACA
AATCAAGAAGACATCAATACCAAAGCGCATTTTTATGAATTTTAACGATTATAAAGTTGA
AAAGCAGTCTGTCATAATGAATCATATCTACGACAATTCTATATAGGGTAGAAAATATTG
CAGATTAATTATGTTAAAAATAGTATTGCATTATGTAAAACTGAATAAATAATGTTTCTT
GAAGACATAACTCTTTATTATCTCTAAACTGATATTTGTACAGGTCATGAAAAGTAAATA
AATTCATGTTAACAATCATTAAGCAAGGCAAAATATTATGAAAATAATAAGAAATCACGT
TTGGACTGATAAGATTGTTATTCTCACTAAAAGAGAGTGTCAGGGTTTTAAATGCGGTAA
ATTTATTAAAGAAACGATGAAAACGTATGAAGTATGCGCAAGTTACAGAACTTTTAAAAT
GATTATATTTGAGAGAGAAAATGAGAGAATATTCGACCTCTAGTCAAGGGTATATACGAC
ACTCACAACCTAATGTCAGTCTAGAAAAAATAATCAGCCCGGTGGTTGATAAAAAGTTAT
TTTTCTCTAATTAAATAAATCTGCAATTCAGATCTCTCCATCGATTCATCATGACATTAA
CAGTTCGCTCTGTCCCAACGACTCCATTTGAAGGACAAAAACCGGGAACAAGTGGATTGC
GTAAAAAAGTTAAAGTTTTTGCTGAGAAAAACTACACTGAGAATTTTGTTCAATGCATTC
TTGATGCAGCTGGTGAGCAAGCAGTTAATGGGGCTGTCTTGGTAGTCGGTGGAGATGGTA
GATATTTTCTTAAAGAAGCTGTTGACATTATTATTAAAATTTGTGCTGGAAATGGAGTTG
GACGATTACTTGTCGGTCAAAATGGAATTCTTTCAACACCTGCCGTTTCAGCACTTATTC
GCTCTAACAAGGCAAATGGTGGAATAATTTGTACTGCCTCACATAATCCCGGTGGACCTG
AAAACGATTTTGGAATCAAATTTAATTGTGAAAATGGTGGACCAGCACCGTCGCAAATTA
TGTCGAGTTGATGAAAGAAATTTTTGATTTTGGAAAACTCAAAGCTTTCGTAAGCGGTTC
AAAACCATTGAAAATGAGAATCGATGCCCTAAATGGTGTTACTGGACCATATGTACGAGA
GATTTTCATCAATCAACTTGGTGCAACTGATGATAATGTTGTGCATACGATTCCTTTACC
TGATTTTGGTGGTCTTCATCCTGATCCAAATTTAACTTATGCAAAAGACCTTGTTGATAC
AGTTTCTGCGGGAGATTATGACATAGGTGCAGCTTTTGATGGTGATGGTGATAGAAACAT
GATTTTAGGAAACAAGGCCTTTTTCGTTACACCAAATGATTCACTTGCTGTCATTGCTGA
TTATGTTGACTGTATTCCGTACTTCAAGAAAAATGGTGTTCAAGGTTTTGCAAGAAGTAT
GCCTACAGCTGCTGCTTTAGATCGTGTGGCTAAAGCGAAAGGTCAAGAAGTTTTTGAGAC
TCCAACAGGTTGGAAATATTTTGGTAATTTGATGGATGCTAACCGCTTATGTCTCTGCGG
CGAAGAATCATTTGGTACTGGTTCAAATCATATTCGTGAGAAAGATGGAATTTGGGCTGC
ACTTGCATGGCTCTCAATAATGGAGCATACAAAGAAATCAATTGAGGAAATTTGCAAGGA
GCATTGGAAAAAATATGGTCGTAACTACTTTACACGTTACGATTATGAAGAATGTGAACT
TGCACCGTGCAATCAAATGATGACTGACTTGGAAAATCTCATCACAAAGCCAGACTTTGT
TGGTCGTGAATTTTCGAATGGAGGAAAGACTTATAAAATAAAACTTGGCGATAATTTCGG
ATATACCGATCCAATTGACGGTTCTGTTGCTACTAAGCAAGGTCTTCGCATCATTTTTGA
AGATGGCTCGAGAATTGTTATGCGTCTATCAGGTACTGGCAGCTCTGGGGCAACTGTGCG
TCTTTATATTGAAGCATATGAGGCAACTAATGTCTTAGGCGCTGCTGCTGATATGCTCAA
GCCATTAATCAATATTGCTCTCGAAATTTCACAATTACCAAAGTACACAGGAAGAAATGC
TCCGACTGTCATTACCTAA

>g7326.t3 Gene=g7326 Length=362
MKEIFDFGKLKAFVSGSKPLKMRIDALNGVTGPYVREIFINQLGATDDNVVHTIPLPDFG
GLHPDPNLTYAKDLVDTVSAGDYDIGAAFDGDGDRNMILGNKAFFVTPNDSLAVIADYVD
CIPYFKKNGVQGFARSMPTAAALDRVAKAKGQEVFETPTGWKYFGNLMDANRLCLCGEES
FGTGSNHIREKDGIWAALAWLSIMEHTKKSIEEICKEHWKKYGRNYFTRYDYEECELAPC
NQMMTDLENLITKPDFVGREFSNGGKTYKIKLGDNFGYTDPIDGSVATKQGLRIIFEDGS
RIVMRLSGTGSSGATVRLYIEAYEATNVLGAAADMLKPLINIALEISQLPKYTGRNAPTV
IT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g7326.t3 Gene3D G3DSA:3.40.120.10 - 1 103 0
13 g7326.t3 Gene3D G3DSA:3.40.120.10 - 104 203 0
12 g7326.t3 Gene3D G3DSA:3.30.310.50 Major birch pollen allergen Bet v 1 204 362 0
4 g7326.t3 PANTHER PTHR22573:SF37 PHOSPHOGLUCOMUTASE-1 2 362 0
5 g7326.t3 PANTHER PTHR22573 PHOSPHOHEXOMUTASE FAMILY MEMBER 2 362 0
6 g7326.t3 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 19 38 0
8 g7326.t3 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 55 68 0
7 g7326.t3 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 83 98 0
2 g7326.t3 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 16 99 0
1 g7326.t3 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 108 222 0
3 g7326.t3 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 287 326 0
11 g7326.t3 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 1 106 0
10 g7326.t3 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 91 229 0
9 g7326.t3 SUPERFAMILY SSF55957 Phosphoglucomutase, C-terminal domain 224 362 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values