General information for g7326.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoglucomutase.
Parent gene
- The parent gene g7326 is located on chr_2: 22964266..22965208 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7326 | g7326.t6 | TSS | g7326.t6 | 22963324 | 22963324 |
| chr_2 | g7326 | g7326.t6 | isoform | g7326.t6 | 22963418 | 22964479 |
| chr_2 | g7326 | g7326.t6 | exon | g7326.t6.exon1 | 22963418 | 22964212 |
| chr_2 | g7326 | g7326.t6 | cds | g7326.t6.CDS1 | 22963418 | 22964212 |
| chr_2 | g7326 | g7326.t6 | exon | g7326.t6.exon2 | 22964266 | 22964479 |
| chr_2 | g7326 | g7326.t6 | cds | g7326.t6.CDS2 | 22964266 | 22964478 |
| chr_2 | g7326 | g7326.t6 | TTS | g7326.t6 | 22965300 | 22965300 |
Sequences
>g7326.t6 Gene=g7326 Length=1009
ATGACATTAACAGTTCGCTCTGTCCCAACGACTCCATTTGAAGGACAAAAACCGGGAACA
AGTGGATTGCGTAAAAAAGTTAAAGTTTTTGCTGAGAAAAACTACACTGAGAATTTTGTT
CAATGCATTCTTGATGCAGCTGGTGAGCAAGCAGTTAATGGGGCTGTCTTGGTAGTCGGT
GGAGATGGTAGATATTTTCTTAAAGAAGCTGTTGACATTATTATTAAAATTTGTGCTGGA
AATGGAGTTGGACGATTACTTGTCGGTCAAAATGGAATTCTTTCAACACCTGCCGTTTCA
GCACTTATTCGCTCTAACAAGGCAAATGGTGGAATAATTTGTACTGCCTCACATAATCCC
GGTGGACCTGAAAACGATTTTGGAATCAAATTTAATTGTGAAAATGGTGGACCAGCACCG
GATGCTTTTACAAATAAAATGTATGATCTCTCAAAGGTCATTAAGGAATATAAAGTAGTT
GAAGGCATCAATGTTGATTTGAATAAAATTGGAACAAACAAATTTGAAGTAAATGGCAAA
TCATTTGTTGTTGATATCATTGATTCAGTCGCAAATTATGTCGAGTTGATGAAAGAAATT
TTTGATTTTGGAAAACTCAAAGCTTTCGTAAGCGGTTCAAAACCATTGAAAATGAGAATC
GATGCCCTAAATGGTGTTACTGGACCATATGTACGAGAGATTTTCATCAATCAACTTGGT
GCAACTGATGATAATGTTGTGCATACGATTCCTTTACCTGATTTTGGTGGTCTTCATCCT
GATCCAAATTTAACTTATGCAAAAGACCTTGTTGATACAGTTTCTGCGGGAGATTATGAC
ATAGGTGCAGCTTTTGATGGTGATGGTGATAGAAACATGATTTTAGGAAACAAGGCCTTT
TTCGTTACACCAAATGATTCACTTGCTGTCATTGCTGATTATGTTGACTGTATTCCGTAC
TTCAAGAAAAATGGTGTTCAAGGTTTTGCAAGAAGTATGCCTACAGCTG
>g7326.t6 Gene=g7326 Length=336
MTLTVRSVPTTPFEGQKPGTSGLRKKVKVFAEKNYTENFVQCILDAAGEQAVNGAVLVVG
GDGRYFLKEAVDIIIKICAGNGVGRLLVGQNGILSTPAVSALIRSNKANGGIICTASHNP
GGPENDFGIKFNCENGGPAPDAFTNKMYDLSKVIKEYKVVEGINVDLNKIGTNKFEVNGK
SFVVDIIDSVANYVELMKEIFDFGKLKAFVSGSKPLKMRIDALNGVTGPYVREIFINQLG
ATDDNVVHTIPLPDFGGLHPDPNLTYAKDLVDTVSAGDYDIGAAFDGDGDRNMILGNKAF
FVTPNDSLAVIADYVDCIPYFKKNGVQGFARSMPTA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7326.t6 | Gene3D | G3DSA:3.40.120.10 | - | 4 | 196 | 0e+00 |
| 11 | g7326.t6 | Gene3D | G3DSA:3.40.120.10 | - | 197 | 299 | 0e+00 |
| 10 | g7326.t6 | Gene3D | G3DSA:3.40.120.10 | - | 300 | 336 | 1e-07 |
| 3 | g7326.t6 | PANTHER | PTHR22573 | PHOSPHOHEXOMUTASE FAMILY MEMBER | 5 | 335 | 0e+00 |
| 4 | g7326.t6 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 110 | 124 | 0e+00 |
| 7 | g7326.t6 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 215 | 234 | 0e+00 |
| 6 | g7326.t6 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 251 | 264 | 0e+00 |
| 5 | g7326.t6 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 279 | 294 | 0e+00 |
| 2 | g7326.t6 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 16 | 157 | 0e+00 |
| 1 | g7326.t6 | Pfam | PF02879 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | 192 | 295 | 0e+00 |
| 9 | g7326.t6 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 4 | 221 | 0e+00 |
| 8 | g7326.t6 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 191 | 302 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
- This transcript has been annotated with K03431 (phosphoglucosamine mutase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
