General information for g7327.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP synthase subunit beta, mitochondrial.
Parent gene
- The parent gene g7327 is located on chr_2: 22966903..22969574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7327 | g7327.t20 | TTS | g7327.t20 | 22965752 | 22965752 |
| chr_2 | g7327 | g7327.t20 | isoform | g7327.t20 | 22966324 | 22968336 |
| chr_2 | g7327 | g7327.t20 | exon | g7327.t20.exon1 | 22966324 | 22966801 |
| chr_2 | g7327 | g7327.t20 | cds | g7327.t20.CDS1 | 22966781 | 22966801 |
| chr_2 | g7327 | g7327.t20 | exon | g7327.t20.exon2 | 22966871 | 22967476 |
| chr_2 | g7327 | g7327.t20 | cds | g7327.t20.CDS2 | 22966871 | 22967326 |
| chr_2 | g7327 | g7327.t20 | exon | g7327.t20.exon3 | 22967538 | 22967575 |
| chr_2 | g7327 | g7327.t20 | exon | g7327.t20.exon4 | 22968287 | 22968336 |
| chr_2 | g7327 | g7327.t20 | TSS | g7327.t20 | 22968351 | 22968351 |
Sequences
>g7327.t20 Gene=g7327 Length=1172
ATGTTTACGGCGGTACGAGCTTCGAAATTACTACAGAATATAGCGAGTAACTAAGGCCGC
AAAAGCTGCTGCTGGTGCTCAGGGCAAAGTTGTTGCTGTCATCGGTGCCGTTGTGGACGT
TCAATTCGATGACAACTTGCCACCAATTTTGAATGCACTCGAGGTTCAAGATCGCCAGAC
TCGTTTAGTCTTGGAAGTCGCTCAGCATTTGGGAGAAAACACTGTCCGCACAATCGCAAT
GGACGGTACAGAAGGTTTAGTTCGTGGACAACGCGTAGCTGACACTGGTTCACCAATTCG
TATCCCAGTCGGTGCTGAAACTTTAGGACGCATTATCAATGTCATTGGCGAGCCAATTGA
TGAACGTGGTCCAATTGAAACCGACAAATCAGCTCCAATTCACGCTGAAGCTCCAGAATT
TGTTGAAATGAGTGTACAGCAAGAAATTCTTGTCACTGGTATCAAGGTTGTAGATTTGTT
GGCCCCATACGCTAAGGGTGGTAAAATTGGTCTCTTTGGTGGTGCTGGAGTAGGAAAAAC
AGTTTTGATTATGGAACTTATTAACAATGTTGCCAAAGCTCATGGTGGTTATTCAGTCTT
TGCTGGTGTCGGAGAACGTACACGTGAGGGTAACGATTTGTACAATGAAATGATTGAGTC
CGGTGTCATCTCATTGAAGGACAAGACTTCAAAGCACTTGTGTACGGTCAAATGAATGAA
CCACCAGGTGCTCGTGCTCGTGTCGCTTTGACTGGTCTCACCGTTGCTGAATATTTCCGT
GATCAAGAAGGACAAGATGTGTTGCTTTTCATTGACAACATTTTCCGTTTCACACAAGCC
GGTTCAGAAGTATCAGCTTTGCTCGGTCGTATTCCATCAGCTGTCGGTTATCAACCAACA
TTGGCCACTGACATGGGTAGTATGCAGGAACGTATCACAACAACAAAGAAGGGTTCAATT
ACATCTGTACAGGCTATCTATGTGCCAGCTGATGACTTGACAGATCCTGCTCCAGCCACA
ACATTCGCTCACTTGGACGCTACAACTGTATTGTCACGTGCTATCGCCGAATTGGGTATC
TATCCAGCTGTCGATCCATTGGATTCAACATCACGTATTATGGACCCTAACATCATCGGA
CAAGAACATTACAACATTGCTCGTGGCGTACA
>g7327.t20 Gene=g7327 Length=158
MDGTEGLVRGQRVADTGSPIRIPVGAETLGRIINVIGEPIDERGPIETDKSAPIHAEAPE
FVEMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV
FAGVGERTREGNDLYNEMIESGVISLKDKTSKHLCTVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7327.t20 | Gene3D | G3DSA:3.40.50.300 | - | 20 | 158 | 0 |
| 2 | g7327.t20 | PANTHER | PTHR15184 | ATP SYNTHASE | 1 | 156 | 0 |
| 3 | g7327.t20 | PANTHER | PTHR15184:SF60 | ATP SYNTHASE SUBUNIT BETA-1, MITOCHONDRIAL-RELATED | 1 | 156 | 0 |
| 1 | g7327.t20 | Pfam | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain | 74 | 144 | 0 |
| 4 | g7327.t20 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 144 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
