General information for g7327.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP synthase subunit beta, mitochondrial.
Parent gene
- The parent gene g7327 is located on chr_2: 22966903..22969574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7327 | g7327.t5 | isoform | g7327.t5 | 22965315 | 22967108 |
| chr_2 | g7327 | g7327.t5 | exon | g7327.t5.exon1 | 22965315 | 22966801 |
| chr_2 | g7327 | g7327.t5 | TTS | g7327.t5 | 22965316 | 22965316 |
| chr_2 | g7327 | g7327.t5 | cds | g7327.t5.CDS1 | 22966011 | 22966784 |
| chr_2 | g7327 | g7327.t5 | exon | g7327.t5.exon2 | 22966871 | 22967108 |
| chr_2 | g7327 | g7327.t5 | TSS | g7327.t5 | NA | NA |
Sequences
>g7327.t5 Gene=g7327 Length=1725
TGGTATCAAGGTTGTAGATTTGTTGGCCCCATACGCTAAGGGTGGTAAAATTGGTCTCTT
TGGTGGTGCTGGAGTAGGAAAAACAGTTTTGATTATGGAACTTATTAACAATGTTGCCAA
AGCTCATGGTGGTTATTCAGTCTTTGCTGGTGTCGGAGAACGTACACGTGAGGGTAACGA
TTTGTACAATGAAATGATTGAGTCCGGTGTCATCTCATTGAAGGACAAGACTTCAAAGCA
CTTGTGTACGGTCAAATGAATGAACCACCAGGTGCTCGTGCTCGTGTCGCTTTGACTGGT
CTCACCGTTGCTGAATATTTCCGTGATCAAGAAGGACAAGATGTGTTGCTTTTCATTGAC
AACATTTTCCGTTTCACACAAGCCGGTTCAGAAGTATCAGCTTTGCTCGGTCGTATTCCA
TCAGCTGTCGGTTATCAACCAACATTGGCCACTGACATGGGTAGTATGCAGGAACGTATC
ACAACAACAAAGAAGGGTTCAATTACATCTGTACAGGCTATCTATGTGCCAGCTGATGAC
TTGACAGATCCTGCTCCAGCCACAACATTCGCTCACTTGGACGCTACAACTGTATTGTCA
CGTGCTATCGCCGAATTGGGTATCTATCCAGCTGTCGATCCATTGGATTCAACATCACGT
ATTATGGACCCTAACATCATCGGACAAGAACATTACAACATTGCTCGTGGCGTACAAAAG
ATCTTGCAAGATTACAAATCACTTCAAGATATTATTGCTATCTTGGGTATGGATGAATTG
TCAGAAGAAGATAAATTGACAGTCGCCCGCGCCCGTAAGATCCAACGTTTCTTGTCACAG
CCATTCCAGGTCGCTGAAGTTTTCACTGGTCATGCCGGTAAATTAGTACCACTCGCAGAA
ACAATTAAGGGCTTCACAAAGATTCTCGGAGGTGAACTCGATCACTTGCCAGAAGTTGCA
TTCTACATGGTCGGACCTATCGAGGAAGTTGTCGAAAAGGCCGAACGTTTGGCTAAGGAA
GCAGCATAAACTGATGATTGTCAATTTTAATGATACATCATCAATAAATCCCTTAAGTAT
AGTATGTTAAAAAATTACACATAACTAAAATGAAAAAAATAATTTTCGCTGAATATTAAG
AGAGAGAGAAAAAGAATCGATCGAAAAAAAAGTAATGATGAGAATAAATTTTTCTTTTTC
TGCAACCACCCCCGATATATACAAGTACACGAGCAGTTGATGAGATGAAACAATGCTAGA
TATTAAACGAATAATCCAAAAACAGTAAAAAAATGCAAAAAAAAAATATTAAAAATTTAC
ATCAAAAAACCCCGTGTGTGTGTCGTCAATCATTTATCGTCCATTAAATCAATCTTCTGG
TTGAATTTTCTCTATCTAGAGGTAGTCAAAATTCCTCCCTTTTAAATATGTGCACATGAA
AATCTCGTGCTTAAGACTCCAGTGATAGTGAAAGTCAATTTTGAAGAAAACTCCCGAGGA
AATTCTCCTTAACTTACTTACATGCATTAAAAACACTTTAAATAAACATCTTATGGGGTT
AATATCGAATGATTATCGCATTGACATCCGAATAGATGAAAATTACATCTTTCACTATTA
CAATATAATAAAAAAGAAAAAAAAAATGAATTGTGAAGAAGAAAAAACTTTCATTAATAA
AAAAAGTCATTTCTGGAAAAGTTCAGAGGTGTTTTAAAAAATTGA
>g7327.t5 Gene=g7327 Length=257
MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY
QPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE
LGIYPAVDPLDSTSRIMDPNIIGQEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDK
LTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLAETIKGFTKILGGELDHLPEVAFYMVG
PIEEVVEKAERLAKEAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7327.t5 | CDD | cd18110 | ATP-synt_F1_beta_C | 141 | 248 | 4.49725E-79 |
| 8 | g7327.t5 | Coils | Coil | Coil | 242 | 257 | - |
| 6 | g7327.t5 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 136 | 7.2E-61 |
| 7 | g7327.t5 | Gene3D | G3DSA:1.10.1140.10 | - | 137 | 257 | 4.0E-62 |
| 2 | g7327.t5 | PANTHER | PTHR15184 | ATP SYNTHASE | 1 | 257 | 4.7E-150 |
| 3 | g7327.t5 | PANTHER | PTHR15184:SF57 | ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL | 1 | 257 | 4.7E-150 |
| 1 | g7327.t5 | Pfam | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain | 1 | 134 | 1.8E-41 |
| 10 | g7327.t5 | ProSitePatterns | PS00152 | ATP synthase alpha and beta subunits signature. | 125 | 134 | - |
| 4 | g7327.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 139 | 1.43E-47 |
| 5 | g7327.t5 | SUPERFAMILY | SSF47917 | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 137 | 253 | 2.25E-54 |
| 11 | g7327.t5 | TIGRFAM | TIGR01039 | atpD: ATP synthase F1, beta subunit | 1 | 252 | 1.7E-149 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | CC |
| GO:0015986 | ATP synthesis coupled proton transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | MF |
KEGG
Orthology
- This transcript has been annotated with K02112 (F-type H+/Na+-transporting ATPase subunit beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
