General information for g7331.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase 3.
Parent gene
- The parent gene g7331 is located on chr_2: 22987410..22988963 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7331 | g7331.t1 | isoform | g7331.t1 | 22987410 | 22988963 |
| chr_2 | g7331 | g7331.t1 | exon | g7331.t1.exon1 | 22987410 | 22987595 |
| chr_2 | g7331 | g7331.t1 | cds | g7331.t1.CDS1 | 22987410 | 22987595 |
| chr_2 | g7331 | g7331.t1 | exon | g7331.t1.exon2 | 22987644 | 22988474 |
| chr_2 | g7331 | g7331.t1 | cds | g7331.t1.CDS2 | 22987644 | 22988474 |
| chr_2 | g7331 | g7331.t1 | exon | g7331.t1.exon3 | 22988731 | 22988805 |
| chr_2 | g7331 | g7331.t1 | cds | g7331.t1.CDS3 | 22988731 | 22988805 |
| chr_2 | g7331 | g7331.t1 | exon | g7331.t1.exon4 | 22988868 | 22988963 |
| chr_2 | g7331 | g7331.t1 | cds | g7331.t1.CDS4 | 22988868 | 22988963 |
| chr_2 | g7331 | g7331.t1 | TSS | g7331.t1 | NA | NA |
| chr_2 | g7331 | g7331.t1 | TTS | g7331.t1 | NA | NA |
Sequences
>g7331.t1 Gene=g7331 Length=1188
ATGAAGCAAATTTTAACATTTTTAATTTTTATTTTACTGAATTTTAAAGATGTTCAAGGA
CAGCCGGGATTATTGACTGGAAAACAAGATGATGTGATAAATCTTTTATCACTCGCGGGA
TTTGCAAATGAGCTTCATCGAATTGAAACTGAAGATGGTTATTTATTGAAGCTTCATCGA
ATTTTTCCAAACAAACCAAAAAACAGACGTGGGCCAGTTCTACTTATGCATGGTTTTCTT
GGCACTTCTGCAGATTTCATTTTTACCGGACCAAACATAGCTTTGGCATATCAACTTCTC
AATGCTGGTTATCATGTATTTATGGGCAACTGTCGTGGTTCAAAATTCTCAATGAAGCAT
AAATCTCTTGATCCGTTGTCGCGTGAATTTTGGCGATTCAGTTTCGACGAAATTGGCTTA
TTGGACTTGCCGGCAATCATTAATTACGTGTTATTTTTGTCAGAAAAAAAGTCATTATTT
TATGTAGGTCACAATCAAGGGGCAACAGCTTTGCTAGTGTTATTGTCATCGCATCCAAAA
TTTAATGAAAAAATTATTCAAGCACACTTTTTGGCGCCGATTGCTTTTATGGATTATCCT
CATCCAATTTTGGCATTTAATGCTGAAGATTATGAAAATTCAATGCGTGTTTTGAGAAAA
TTTAATTTTGTGTCAATGGTTGATTTTACAAAAACTATCGTTGACAATTATTGTAGTGAG
AATATTCCTGGTGGTCTTCGTTTATGTGTTCGACTTTGGGAATTTCTTTTTGGTCGCAAT
CAAATTGAAACAGAAATAGATCCAAAGCTATTGCTTGATTTGCCAGCATTCATCTCACCA
ACTGCAAGTGTTCGTCAATTTCTTCATTTTCTAAAAATTTACCGCACTGGAAAATTTCAA
AGCTATGATAGAGATGGCAAAGGCAGAGAATATAAACTAACAAATGTACAAATACCAGTT
TATATTTATCATGGTGCTGAAGATATGATTGTATCTCGAATAGATGTTGAACGATTGAAA
AATATTCTTGCTCCTTTTATCAAGGTCTACAATGTCATACCAAATTTGAATCATTACGAT
TTGTTACTCAGCAAAAATGGAAAGACTCATCTCTATGATGATATTTGTAAAGCTATGACA
AATGACGGTCTTGACTTTTTTGATTATGTAAAGAATATTTTTATTTGA
>g7331.t1 Gene=g7331 Length=395
MKQILTFLIFILLNFKDVQGQPGLLTGKQDDVINLLSLAGFANELHRIETEDGYLLKLHR
IFPNKPKNRRGPVLLMHGFLGTSADFIFTGPNIALAYQLLNAGYHVFMGNCRGSKFSMKH
KSLDPLSREFWRFSFDEIGLLDLPAIINYVLFLSEKKSLFYVGHNQGATALLVLLSSHPK
FNEKIIQAHFLAPIAFMDYPHPILAFNAEDYENSMRVLRKFNFVSMVDFTKTIVDNYCSE
NIPGGLRLCVRLWEFLFGRNQIETEIDPKLLLDLPAFISPTASVRQFLHFLKIYRTGKFQ
SYDRDGKGREYKLTNVQIPVYIYHGAEDMIVSRIDVERLKNILAPFIKVYNVIPNLNHYD
LLLSKNGKTHLYDDICKAMTNDGLDFFDYVKNIFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7331.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 27 | 381 | 7.2E-92 |
| 2 | g7331.t1 | PANTHER | PTHR11005:SF127 | LIPASE-RELATED | 27 | 381 | 5.1E-87 |
| 3 | g7331.t1 | PANTHER | PTHR11005 | LYSOSOMAL ACID LIPASE-RELATED | 27 | 381 | 5.1E-87 |
| 12 | g7331.t1 | PIRSF | PIRSF000862 | Steryl_ester_lip | 1 | 383 | 3.2E-77 |
| 1 | g7331.t1 | Pfam | PF04083 | Partial alpha/beta-hydrolase lipase region | 36 | 88 | 1.0E-13 |
| 8 | g7331.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 9 | g7331.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 10 | g7331.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 11 | g7331.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 7 | g7331.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 395 | - |
| 4 | g7331.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 36 | 375 | 1.02E-42 |
| 5 | g7331.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | MF |
| GO:0006629 | lipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed