Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7356 g7356.t2 TTS g7356.t2 23361878 23361878
chr_2 g7356 g7356.t2 isoform g7356.t2 23362381 23364491
chr_2 g7356 g7356.t2 exon g7356.t2.exon1 23362381 23363675
chr_2 g7356 g7356.t2 cds g7356.t2.CDS1 23363102 23363675
chr_2 g7356 g7356.t2 exon g7356.t2.exon2 23363753 23363855
chr_2 g7356 g7356.t2 cds g7356.t2.CDS2 23363753 23363855
chr_2 g7356 g7356.t2 exon g7356.t2.exon3 23363919 23364063
chr_2 g7356 g7356.t2 cds g7356.t2.CDS3 23363919 23364063
chr_2 g7356 g7356.t2 exon g7356.t2.exon4 23364129 23364491
chr_2 g7356 g7356.t2 cds g7356.t2.CDS4 23364129 23364155
chr_2 g7356 g7356.t2 TSS g7356.t2 23364669 23364669

Sequences

>g7356.t2 Gene=g7356 Length=1906
ATGGAATCAGAAAGCTTTTCTTTGCTAGAAGTAAGTTATGACGAAAAAAGCTATAAAAAT
GTAAATTAAATGAAAGTTTTAACTTTAATCAGAGATTTCTTCCGTTTGTTAATTAAATAG
CACATTAATCAACGCTAAGGCTAGAAATATAATTAAATTTTCATATTCAGGGTTGACTTT
ACATAAACATATTGATAGAATTTTTTTCTTCTTCTTTTATTGATTGAAGGAGAGAAATAT
TAGATTTCACAAAGAGCTTCGTTAGATGTAATTTGAATTTTGTGGTGTGTGGATTGAATT
TCATGAAAATAATATTGAAAATCGATTGAAAGAAATATGAAGTCAATTCGTTTCAGTAGT
TTTTCTGATGAGATGAGTAACGAACGACAACCTCTGCTTATAAGCGACACTGAGCAGCAC
AGTGTATCACCACCAAGACCAGATATTCGAAATTCACCTGAAAATATCATCGTAGACGGA
AATGAAGATGACAAGAGTGTTGATGAGGACCTTTATGACCCTTACAAAAATCGTCAACTA
GAACACCCGACGAGTAATTTAGAGACGATGATTTTGTTAATAAAAGGCAATATCGGTACT
GGAATACTTGCTATGGGTGATGCATTTAAGAACTCTGGCTTGTACGTTGGACTGTTTGGA
ACTTTTATTCTTGGATTCGTCTGTACACACTGCATGCATATGCTAGTAAAATGTTCTCAT
GAGCTTTGCGTTAGAGTGCAAGTACCATCAATGAATTTCTCCTCAGTCGTTTATGCGAGC
TTTGAAACTGGACCTGTGGCATTGAGAAAATATTCACATCTTGCCAAAAATTTAATTAAT
CTTTTTCTCATTATCACTCAAATTGGATTTTGCTGCGTATATTTTGTATTTGTTGCAGTA
AATTTACAAGAAATTGTTGCTCATTATTGGATTAAATTGGACACTCAAGTTTTTCTCATT
CTTTTGCTCATTCCAATGATTTTGGTGAATCTTGTAAAAACACTAAAATATCTCACACCA
TTTTCCTTCATTGCTTCAATTTTAACAATTGTTGGACTGGTCATTTGCTTCTATTTCATG
CTACAGGATTTACCAAGTATTAAAAGTGTCAAACCTTTTGCAACCTGGTCTCAATTACCT
CTGTTTTTCGGCACTGCTATCTATGGTAAGATATTGTCGACCTAGCCAGAATTTTTATTA
ATTTCTTTAATTTTTCACAGCTTTTGAAGGAATTGGAGTTGTACTTCCACTTGAAAATAA
TTTGAAAAACCCAGAATCTTTTGGTGCATGTGCTGGAATTCTTAATATCGGAATGCTTAT
TGTTGCATTACTTTACACAGCAGTTGGATTCTTTGGTTACTTGAAATACGGCGAAAATGT
CTTAGGCTCGATTACTTTAAATTTAGGCGATAATATATTGGCACAAATTGTGAGATTAAT
GATGGCATTGGCAATTTTTTTGAGTTATACAATTCAATTCTATGTTCCTGTTAATATAAT
TGGACCATGGTTGAGAGCTCAATTGCATGGAGAGACAAGAAGAGTTTTTGGTGATTATGC
ATTGAGAATTGGTTTGGTATTAATTACATTTCTTCTTGCTGTAATGATTCCAAACCTTGA
AGTTGTGATTTCATTAGTTGGCGCCATTTCATCATCAGGTATGAAAAAAATTATTTAAAA
TTTTATTTTCTTTCAAAAAGTTTAATTTTTTACAGCATTGGCATTAATTTTTCCCCCACT
TATCGAAATAATCACATTCTGGCCTAACAAGCTAGGAAAGTATAATTGGATCTTGATAAA
AGATCTTGTGATAATTCTTATCGGCTTTTTGGTATTCGTCTTTGGAACATTTACAAGTTT
AATGCAAATTTTACATCCAGAGGTATTGCCAAATAGTGGTGTATAA

>g7356.t2 Gene=g7356 Length=282
MKSIRFSSFSDEMSNERQPLLISDTEQHSVSPPRPDIRNSPENIIVDGNEDDKSVDEDLY
DPYKNRQLEHPTSNLETMILLIKGNIGTGILAMGDAFKNSGLYVGLFGTFILGFVCTHCM
HMLVKCSHELCVRVQVPSMNFSSVVYASFETGPVALRKYSHLAKNLINLFLIITQIGFCC
VYFVFVAVNLQEIVAHYWIKLDTQVFLILLLIPMILVNLVKTLKYLTPFSFIASILTIVG
LVICFYFMLQDLPSIKSVKPFATWSQLPLFFGTAIYGKILST

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7356.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 48 -
10 g7356.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 36 -
2 g7356.t2 PANTHER PTHR22950 AMINO ACID TRANSPORTER 45 276 1.5E-71
3 g7356.t2 PANTHER PTHR22950:SF460 PROTON-COUPLED AMINO ACID TRANSPORTER 4-LIKE PROTEIN 45 276 1.5E-71
1 g7356.t2 Pfam PF01490 Transmembrane amino acid transporter protein 70 276 1.9E-23
13 g7356.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 74 -
19 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 75 94 -
17 g7356.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 95 99 -
23 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 100 124 -
12 g7356.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 125 165 -
20 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 166 185 -
16 g7356.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 186 196 -
21 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 197 217 -
11 g7356.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 218 228 -
18 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 229 249 -
15 g7356.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 250 260 -
22 g7356.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 261 280 -
14 g7356.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 281 282 -
7 g7356.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -
8 g7356.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 166 188 -
5 g7356.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 203 220 -
6 g7356.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 227 249 -
4 g7356.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 264 281 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values