General information for g7356.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter 1.
Parent gene
- The parent gene g7356 is located on chr_2: 23363342..23364685 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7356 | g7356.t3 | TTS | g7356.t3 | 23361878 | 23361878 |
| chr_2 | g7356 | g7356.t3 | isoform | g7356.t3 | 23362381 | 23364685 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon1 | 23362381 | 23362571 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS1 | 23362381 | 23362571 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon2 | 23362629 | 23363066 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS2 | 23362629 | 23363066 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon3 | 23363122 | 23363675 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS3 | 23363122 | 23363675 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon4 | 23363753 | 23363855 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS4 | 23363753 | 23363855 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon5 | 23363919 | 23364063 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS5 | 23363919 | 23364063 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon6 | 23364462 | 23364511 |
| chr_2 | g7356 | g7356.t3 | cds | g7356.t3.CDS6 | 23364462 | 23364491 |
| chr_2 | g7356 | g7356.t3 | exon | g7356.t3.exon7 | 23364609 | 23364685 |
| chr_2 | g7356 | g7356.t3 | TSS | g7356.t3 | 23364669 | 23364669 |
Sequences
>g7356.t3 Gene=g7356 Length=1558
GTGTACGTATATATCAACATCTCTTTTCTTTTATCCGTCTAACACTTTTTTGTACATTTA
CTCAATCTCGCTCAAAATGCAAAAATTATGAATCAACATGGAATCAGAAAGCTTTTCTTT
GCTAGAATCTGATGAGATGAGTAACGAACGACAACCTCTGCTTATAAGCGACACTGAGCA
GCACAGTGTATCACCACCAAGACCAGATATTCGAAATTCACCTGAAAATATCATCGTAGA
CGGAAATGAAGATGACAAGAGTGTTGATGAGGACCTTTATGACCCTTACAAAAATCGTCA
ACTAGAACACCCGACGAGTAATTTAGAGACGATGATTTTGTTAATAAAAGGCAATATCGG
TACTGGAATACTTGCTATGGGTGATGCATTTAAGAACTCTGGCTTGTACGTTGGACTGTT
TGGAACTTTTATTCTTGGATTCGTCTGTACACACTGCATGCATATGCTAGTAAAATGTTC
TCATGAGCTTTGCGTTAGAGTGCAAGTACCATCAATGAATTTCTCCTCAGTCGTTTATGC
GAGCTTTGAAACTGGACCTGTGGCATTGAGAAAATATTCACATCTTGCCAAAAATTTAAT
TAATCTTTTTCTCATTATCACTCAAATTGGATTTTGCTGCGTATATTTTGTATTTGTTGC
AGTAAATTTACAAGAAATTGTTGCTCATTATTGGATTAAATTGGACACTCAAGTTTTTCT
CATTCTTTTGCTCATTCCAATGATTTTGGTGAATCTTGTAAAAACACTAAAATATCTCAC
ACCATTTTCCTTCATTGCTTCAATTTTAACAATTGTTGGACTGGTCATTTGCTTCTATTT
CATGCTACAGGATTTACCAAGTATTAAAAGTGTCAAACCTTTTGCAACCTGGTCTCAATT
ACCTCTGTTTTTCGGCACTGCTATCTATGCTTTTGAAGGAATTGGAGTTGTACTTCCACT
TGAAAATAATTTGAAAAACCCAGAATCTTTTGGTGCATGTGCTGGAATTCTTAATATCGG
AATGCTTATTGTTGCATTACTTTACACAGCAGTTGGATTCTTTGGTTACTTGAAATACGG
CGAAAATGTCTTAGGCTCGATTACTTTAAATTTAGGCGATAATATATTGGCACAAATTGT
GAGATTAATGATGGCATTGGCAATTTTTTTGAGTTATACAATTCAATTCTATGTTCCTGT
TAATATAATTGGACCATGGTTGAGAGCTCAATTGCATGGAGAGACAAGAAGAGTTTTTGG
TGATTATGCATTGAGAATTGGTTTGGTATTAATTACATTTCTTCTTGCTGTAATGATTCC
AAACCTTGAAGTTGTGATTTCATTAGTTGGCGCCATTTCATCATCAGCATTGGCATTAAT
TTTTCCCCCACTTATCGAAATAATCACATTCTGGCCTAACAAGCTAGGAAAGTATAATTG
GATCTTGATAAAAGATCTTGTGATAATTCTTATCGGCTTTTTGGTATTCGTCTTTGGAAC
ATTTACAAGTTTAATGCAAATTTTACATCCAGAGGTATTGCCAAATAGTGGTGTATAA
>g7356.t3 Gene=g7356 Length=486
MESESFSLLESDEMSNERQPLLISDTEQHSVSPPRPDIRNSPENIIVDGNEDDKSVDEDL
YDPYKNRQLEHPTSNLETMILLIKGNIGTGILAMGDAFKNSGLYVGLFGTFILGFVCTHC
MHMLVKCSHELCVRVQVPSMNFSSVVYASFETGPVALRKYSHLAKNLINLFLIITQIGFC
CVYFVFVAVNLQEIVAHYWIKLDTQVFLILLLIPMILVNLVKTLKYLTPFSFIASILTIV
GLVICFYFMLQDLPSIKSVKPFATWSQLPLFFGTAIYAFEGIGVVLPLENNLKNPESFGA
CAGILNIGMLIVALLYTAVGFFGYLKYGENVLGSITLNLGDNILAQIVRLMMALAIFLSY
TIQFYVPVNIIGPWLRAQLHGETRRVFGDYALRIGLVLITFLLAVMIPNLEVVISLVGAI
SSSALALIFPPLIEIITFWPNKLGKYNWILIKDLVIILIGFLVFVFGTFTSLMQILHPEV
LPNSGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g7356.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - |
| 15 | g7356.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - |
| 2 | g7356.t3 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 47 | 475 | 1.4E-142 |
| 3 | g7356.t3 | PANTHER | PTHR22950:SF460 | PROTON-COUPLED AMINO ACID TRANSPORTER 4-LIKE PROTEIN | 47 | 475 | 1.4E-142 |
| 1 | g7356.t3 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 71 | 470 | 5.0E-72 |
| 25 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 102 | - |
| 31 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 125 | - |
| 16 | g7356.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 126 | 166 | - |
| 32 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 186 | - |
| 23 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 187 | 197 | - |
| 30 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 198 | 218 | - |
| 20 | g7356.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 219 | 229 | - |
| 28 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 250 | - |
| 26 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 269 | - |
| 34 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 270 | 288 | - |
| 19 | g7356.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 289 | 299 | - |
| 33 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 300 | 323 | - |
| 22 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 324 | 342 | - |
| 35 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 343 | 366 | - |
| 18 | g7356.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 367 | 386 | - |
| 36 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 407 | - |
| 24 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 408 | 412 | - |
| 29 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 433 | - |
| 17 | g7356.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 434 | 453 | - |
| 27 | g7356.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 454 | 476 | - |
| 21 | g7356.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 477 | 486 | - |
| 11 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 125 | - |
| 5 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 9 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 221 | - |
| 12 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 228 | 250 | - |
| 13 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 287 | - |
| 7 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 300 | 322 | - |
| 10 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 372 | - |
| 8 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 392 | 414 | - |
| 4 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 419 | 441 | - |
| 6 | g7356.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 454 | 476 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
