General information for g7359.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mediator of RNA polymerase II transcription subunit 30.
Parent gene
- The parent gene g7359 is located on chr_2: 23371201..23371631 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7359 | g7359.t18 | TTS | g7359.t18 | 23370793 | 23370793 |
| chr_2 | g7359 | g7359.t18 | isoform | g7359.t18 | 23370816 | 23371534 |
| chr_2 | g7359 | g7359.t18 | exon | g7359.t18.exon1 | 23370816 | 23371219 |
| chr_2 | g7359 | g7359.t18 | cds | g7359.t18.CDS1 | 23370816 | 23371219 |
| chr_2 | g7359 | g7359.t18 | exon | g7359.t18.exon2 | 23371304 | 23371456 |
| chr_2 | g7359 | g7359.t18 | cds | g7359.t18.CDS2 | 23371304 | 23371456 |
| chr_2 | g7359 | g7359.t18 | exon | g7359.t18.exon3 | 23371531 | 23371534 |
| chr_2 | g7359 | g7359.t18 | cds | g7359.t18.CDS3 | 23371531 | 23371534 |
| chr_2 | g7359 | g7359.t18 | TSS | g7359.t18 | 23371632 | 23371632 |
Sequences
>g7359.t18 Gene=g7359 Length=561
ATGGATTTTCAAAATCAAATTGCACCAAGTAATCAACAACAACAAAATCAAAGTCAAATT
CCTCAATTATCACTACAAACACCTCAAACGCCTAATCAAACTATAGCAGGAGCAAATATT
AATCCACAACAGAAAGAATTAAATGTTTTAACTTTATTGCAAGATATTCTCTCACGATTT
CAAGATGTTTTTAGCATTCTTAAAAATCATCAGCCACCAAATGGAACTCAAGGGTCAGGA
ATAATAAGTGCAGACAAACGACAAAAAATGCAAGATCAATTTAGAACAATACGATTATTG
TTTAAGAGACTTCGATTGCTCTATGAAAAGTGTGAAAACTCAGAAGAATATATCGAAATT
GAAAATTTAATCCCATATGTTGATAACCCAAACACACTTGATCCAATGTCCAATGCTGAT
GAATATGAGAAAGCATTGGCAGAAAATCGTGAACTCAATGAAGTATTGAAAGAGAAAAAT
CTTCAACTTAAAGAGATTATAGATCGCATAAGAATTATTGTTAGTGAAATCAATACAATG
ATGTCGGCAAGAAGATGTTAA
>g7359.t18 Gene=g7359 Length=186
MDFQNQIAPSNQQQQNQSQIPQLSLQTPQTPNQTIAGANINPQQKELNVLTLLQDILSRF
QDVFSILKNHQPPNGTQGSGIISADKRQKMQDQFRTIRLLFKRLRLLYEKCENSEEYIEI
ENLIPYVDNPNTLDPMSNADEYEKALAENRELNEVLKEKNLQLKEIIDRIRIIVSEINTM
MSARRC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7359.t18 | Coils | Coil | Coil | 139 | 169 | - |
| 4 | g7359.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 2 | g7359.t18 | PANTHER | PTHR31705:SF4 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 | 13 | 185 | 1.5E-41 |
| 3 | g7359.t18 | PANTHER | PTHR31705 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 | 13 | 185 | 1.5E-41 |
| 1 | g7359.t18 | Pfam | PF11315 | Mediator complex subunit 30 | 53 | 182 | 1.3E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed