General information for g737.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositide phosphatase SAC2.
Parent gene
- The parent gene g737 is located on chr_3: 5612786..5613404 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g737 | g737.t3 | isoform | g737.t3 | 5611397 | 5613404 |
| chr_3 | g737 | g737.t3 | exon | g737.t3.exon1 | 5611397 | 5612723 |
| chr_3 | g737 | g737.t3 | cds | g737.t3.CDS1 | 5611449 | 5612723 |
| chr_3 | g737 | g737.t3 | exon | g737.t3.exon2 | 5612786 | 5613404 |
| chr_3 | g737 | g737.t3 | cds | g737.t3.CDS2 | 5612786 | 5612890 |
| chr_3 | g737 | g737.t3 | TTS | g737.t3 | 5613636 | 5613636 |
| chr_3 | g737 | g737.t3 | TSS | g737.t3 | NA | NA |
Sequences
>g737.t3 Gene=g737 Length=1946
TTACTATTTGGCGCGTTTTAAAGATACATATAGACAGGCAACAATTGATTTGATGATGGG
AAATAATGTTTCAGCAGAATCTCTGAGTGCTCTTGGTGGACAACAAATCACTGATGAAAC
AGATGCTGCTGAAAATGCAGAACATGCACGATTACTCGTTGAAGATTGCAAGAGAATGTT
ATTAGGTGGTGAATTAGTCATAGGTTCATGGGGATTAATTGATGCCGATCCATCTACTGG
AGATATAAATGAAACTGAAGTTGATACCATATTATTGCTTACCAGTACAGAATTTTATGT
TGCTGACTATGACAGTCAATTAGACAAAATTGTTAAATTTGAAAACGTATCGCTTAATAA
CATCACTTTGATAGAATTTGGAATGTTTCAACAACAACAGATTTTTAAAGGACCATCAAC
TGCACATTTATGCATTCGTATAAATTATACGATTGATAATGTTGATGGATATTTTCACAT
GTTCCGTTCACCAAATATTAGATTCTTCAATAATACTGCAGTTGTTATAGAAAAACATGA
AGAACTTTTAGAATCAATGACAGCAATAGTGGAATTTTTCAGAATTGCTTTACAAAATCT
TGGTAGAAATGATGTTCAATTTCATTGTGGTGGTGCTTTGCAAAGGAGGAAGAGTAGAAA
TATGCTTCAGCCTCCAGGCATTCCTCGTAATTTGAGTGAGTCACAACTTGTTCAAATAGG
ATCGAAAGCACTGAGTAATGTTGCTGGACAATTTTCAAAATTAGGTCAAACTTTTAATTC
TTCAAAAAGTAAAAATAAGCAAAATGCAAATCCACCAATTGCTTATAATGCATCAAATGC
TGCTAGTTCTTTCTATGTTGGTCGCGAAGCTAAAGAAGAAGATTCTGACGACGATAATGA
TTGCTCGATTTATGAACCAGATGCAATTGAGACCGAACAAAACCCAATATTTAACGAAAA
TGCATTCCTTCCTAGTGTCGGTATTGTCATGTCAAATCCATCAAATGATGATGAAGAATC
ACCTGAAATGCTTCAAACTAAGAATCCCAGTAAAAATCAATCAGATATGCAAGCAATTTC
AATATGCAGTGTAACTGATCACATTCATGTTCCTTCTGCTATGCAGCCGCTTTCTCCAAT
GATGAGCCCAATGAAGCATGCACCTGAAATTATAATTGATAGTGCTATACCGAGAGGAAA
AAATGAAATGACATTGAACCTAAGTGGATCTCAAAGTGAAAATGCAATAAAACAATTAAA
AACTTTAACAAGTCCTTTAAGCATGTTTGCAAAAGGTGTTCAAAGTAGCTTGGGCTTGTC
TTCAAAGTCACAAACACAATTAAGTGAAATTCTTACAAGTGACATCAACACAAAGAAGTT
AGAAGAGAAATTTGCTGAAAGTAAATGCAAATCAAAATTGATAGCATTATAAAAATCTAC
CACTATTTACTTGAAAAGATCAAGCTTGATAATAAGTATAATGAGTATTTTCCTTTTATA
ATAAGAATTTTGTGATCTTATGACGAGGACGTGAAAATCATATGATTAAGGGACAGAAGC
TTTTTTACAAATTAATCCCATACTTTTGTGATGTTCGTTTGACGATAATTGTATTTAATT
GACATCTGCCTATTTATTTTAATTACATACGACAAAAAGTAATTTAGGACAAATTTATGC
CAATTCGAAGCATATAGTTTTTTTTATTTTAAAACCAAAATAAGTAATAAAATGAATTGC
TTTAATTATTATATTATATACCTATATACATACATACAACTATTTATTCATAAATATTGT
AACAAAAATTATGAAATGCTTTTTAAAAAAATGAACAAAACATAGAAACAAATTGCACCT
AAAAATTAATTGCTTAAGAACATACATAGTCAATTATAAGCATTTCTAAATTTTAATGAG
CAAAAAAATAACATGAAAACTCAAAA
>g737.t3 Gene=g737 Length=459
MMGNNVSAESLSALGGQQITDETDAAENAEHARLLVEDCKRMLLGGELVIGSWGLIDADP
STGDINETEVDTILLLTSTEFYVADYDSQLDKIVKFENVSLNNITLIEFGMFQQQQIFKG
PSTAHLCIRINYTIDNVDGYFHMFRSPNIRFFNNTAVVIEKHEELLESMTAIVEFFRIAL
QNLGRNDVQFHCGGALQRRKSRNMLQPPGIPRNLSESQLVQIGSKALSNVAGQFSKLGQT
FNSSKSKNKQNANPPIAYNASNAASSFYVGREAKEEDSDDDNDCSIYEPDAIETEQNPIF
NENAFLPSVGIVMSNPSNDDEESPEMLQTKNPSKNQSDMQAISICSVTDHIHVPSAMQPL
SPMMSPMKHAPEIIIDSAIPRGKNEMTLNLSGSQSENAIKQLKTLTSPLSMFAKGVQSSL
GLSSKSQTQLSEILTSDINTKKLEEKFAESKCKSKLIAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g737.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 337 | - |
| 2 | g737.t3 | PANTHER | PTHR45662:SF8 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC2 | 1 | 309 | 4.1E-20 |
| 3 | g737.t3 | PANTHER | PTHR45662 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 | 1 | 309 | 4.1E-20 |
| 1 | g737.t3 | Pfam | PF12456 | Inositol phosphatase | 25 | 133 | 5.6E-23 |
| 5 | g737.t3 | ProSiteProfiles | PS51791 | hSac2 domain profile. | 25 | 181 | 10.7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
