Gene loci information

Transcript annotation

  • This transcript has been annotated as 1-acyl-sn-glycerol-3-phosphate acyltransferase delta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7370 g7370.t2 isoform g7370.t2 23415767 23417766
chr_2 g7370 g7370.t2 exon g7370.t2.exon1 23415767 23415929
chr_2 g7370 g7370.t2 TSS g7370.t2 23415793 23415793
chr_2 g7370 g7370.t2 exon g7370.t2.exon2 23416358 23416582
chr_2 g7370 g7370.t2 cds g7370.t2.CDS1 23416399 23416582
chr_2 g7370 g7370.t2 exon g7370.t2.exon3 23416650 23416739
chr_2 g7370 g7370.t2 cds g7370.t2.CDS2 23416650 23416739
chr_2 g7370 g7370.t2 exon g7370.t2.exon4 23416799 23417505
chr_2 g7370 g7370.t2 cds g7370.t2.CDS3 23416799 23417505
chr_2 g7370 g7370.t2 exon g7370.t2.exon5 23417566 23417766
chr_2 g7370 g7370.t2 cds g7370.t2.CDS4 23417566 23417766
chr_2 g7370 g7370.t2 TTS g7370.t2 23417944 23417944

Sequences

>g7370.t2 Gene=g7370 Length=1386
GCTACAAGGAAATTTTTAAAATCGATGATAAAATAAAAGCGTGCATAAAAATAACTATTT
TTTATCGTTTTGGATTTTGATATTTGAATTCTATTTAAATTTTCTTATTAAATGAACAAG
TAGAATATTTTTAAAGTATTTACGAAGTGAATAAAATATATAGATTTTCGCGCACAAACA
TTTTTGTACAAAGAAGTATCTAACATGACTTCGTTAATAAGTACAATTAAAGCCTCAACA
GCTGTTCATTTGTGCTTTGCAATTTCTTATTTCACATCAGGACTCGTAATAAACATTCTT
CAATGTTTATTGTTCATCTTTATCAAGCCATTTAATAAGAAGCTATTTAGAACTTTAATA
TACTATTTATGTTATTCATTCCATTGCCAATTAGTCGCAATTGGAGAGTGGTGGAGTGGA
AGCACAGTTAAAGTTTATATTTCAAAGGAGGATTTTAAGAAAGCAGGCACTGAGCATGCA
TTACTGGTTATGAACCATAGTTATGAAACTGATTGGCTCTTTGGATGGATGTTTTGTGAA
AAAGTTGGTGTGCTTGGAAACTGCAAAGCATATGCTAAGAAAGTTATTTCGTTAATTCCA
ACTATCGGGTGGTCATGGAAATTTGCTGAATTTGTCTTCTTAGAAAGATCTTTTGATAAA
GATAAAGAAATTATAATTAAACAGCTTAATGAAATCTTTGATTATCCATCTCCAGTTTGG
CTTTTATTAAATGCAGAAGGCACTCGATTTACGAAATCAAAACATGAAGCTTCCGTAAAG
TTTGCTCAAGAACGAAATATGACTGTTCTTAATCATCATTTAATTCCCCGTACAAAAGGT
TTTACTGCTAGCTTGCCAGTATTGAAAAAGAAGTGTGCTGCTATTATGGATGTACAACTT
GCTTTTCATGAAGATGATGTTGACAAACCGACTGTCATAAATTTGTTAAGAGGTAAAAAA
ATTACGGGCCATATATATTTGAGGAGAGTGCCAATGTCAGATGTTCCTGACGATGAAGAG
CAAGCAGCTAAATGGCTTCATGAATTGTTTATTAGAAAGGATAAGTTGCAAACTAGTTTC
CATAAGACAGGAGACTTTTTCAAAGATACCGACATTGAACCCATCGAGCCAATAATAATT
AAACCAAGAAAAAGTAGTCTTCTAAATTGGGTTGGTTGGATTGCTGTCGCTCTCATTCCA
ATTTTGTATCTGCTGTTTTCTATGATTGCTAGTGGACAAGTATTTTATGTACTCATTGGT
GTTTCCATTACTGTAGCTTTTTACATGCTCTTTAATTATGCAATTGGAACGACTAAAATA
AGCAAAGGATCAGCTTATGGAGGTAGAACAAAAAACGAGCATAAAGACGAGAAGAAAGAA
CAATAG

>g7370.t2 Gene=g7370 Length=393
MTSLISTIKASTAVHLCFAISYFTSGLVINILQCLLFIFIKPFNKKLFRTLIYYLCYSFH
CQLVAIGEWWSGSTVKVYISKEDFKKAGTEHALLVMNHSYETDWLFGWMFCEKVGVLGNC
KAYAKKVISLIPTIGWSWKFAEFVFLERSFDKDKEIIIKQLNEIFDYPSPVWLLLNAEGT
RFTKSKHEASVKFAQERNMTVLNHHLIPRTKGFTASLPVLKKKCAAIMDVQLAFHEDDVD
KPTVINLLRGKKITGHIYLRRVPMSDVPDDEEQAAKWLHELFIRKDKLQTSFHKTGDFFK
DTDIEPIEPIIIKPRKSSLLNWVGWIAVALIPILYLLFSMIASGQVFYVLIGVSITVAFY
MLFNYAIGTTKISKGSAYGGRTKNEHKDEKKEQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g7370.t2 CDD cd07990 LPLAT_LCLAT1-like 64 260 3.09702E-63
3 g7370.t2 PANTHER PTHR10983:SF8 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE DELTA 9 384 1.1E-101
4 g7370.t2 PANTHER PTHR10983 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 9 384 1.1E-101
2 g7370.t2 Pfam PF01553 Acyltransferase 82 189 4.5E-11
1 g7370.t2 Pfam PF16076 Acyltransferase C-terminus 246 325 2.3E-23
11 g7370.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
14 g7370.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 40 -
10 g7370.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 41 318 -
13 g7370.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 319 341 -
12 g7370.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 342 346 -
15 g7370.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 347 367 -
9 g7370.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 368 393 -
8 g7370.t2 SMART SM00563 plsc_2 92 214 5.4E-15
6 g7370.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 18 40 -
5 g7370.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 319 341 -
7 g7370.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 346 368 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values