General information for g7370.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 1-acyl-sn-glycerol-3-phosphate acyltransferase delta.
Parent gene
- The parent gene g7370 is located on chr_2: 23416798..23417766 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7370 | g7370.t3 | isoform | g7370.t3 | 23415771 | 23417766 |
| chr_2 | g7370 | g7370.t3 | exon | g7370.t3.exon1 | 23415771 | 23415933 |
| chr_2 | g7370 | g7370.t3 | TSS | g7370.t3 | 23415793 | 23415793 |
| chr_2 | g7370 | g7370.t3 | exon | g7370.t3.exon2 | 23416358 | 23416582 |
| chr_2 | g7370 | g7370.t3 | cds | g7370.t3.CDS1 | 23416399 | 23416582 |
| chr_2 | g7370 | g7370.t3 | exon | g7370.t3.exon3 | 23416650 | 23416739 |
| chr_2 | g7370 | g7370.t3 | cds | g7370.t3.CDS2 | 23416650 | 23416739 |
| chr_2 | g7370 | g7370.t3 | exon | g7370.t3.exon4 | 23416799 | 23417505 |
| chr_2 | g7370 | g7370.t3 | cds | g7370.t3.CDS3 | 23416799 | 23417505 |
| chr_2 | g7370 | g7370.t3 | exon | g7370.t3.exon5 | 23417566 | 23417766 |
| chr_2 | g7370 | g7370.t3 | cds | g7370.t3.CDS4 | 23417566 | 23417766 |
| chr_2 | g7370 | g7370.t3 | TTS | g7370.t3 | 23417944 | 23417944 |
Sequences
>g7370.t3 Gene=g7370 Length=1386
CAAGGAAATTTTTAAAATCGATGATAAAATAAAAGCGTGCATAAAAATAACTATTTTTTA
TCGTTTTGGATTTTGATATTTGAATTCTATTTAAATTTTCTTATTAAATGAACAAGTAGA
ATATTTTTAAAGTATTTACGAAGTGAATAAAATATATAGGTAAATTTTCGCGCACAAACA
TTTTTGTACAAAGAAGTATCTAACATGACTTCGTTAATAAGTACAATTAAAGCCTCAACA
GCTGTTCATTTGTGCTTTGCAATTTCTTATTTCACATCAGGACTCGTAATAAACATTCTT
CAATGTTTATTGTTCATCTTTATCAAGCCATTTAATAAGAAGCTATTTAGAACTTTAATA
TACTATTTATGTTATTCATTCCATTGCCAATTAGTCGCAATTGGAGAGTGGTGGAGTGGA
AGCACAGTTAAAGTTTATATTTCAAAGGAGGATTTTAAGAAAGCAGGCACTGAGCATGCA
TTACTGGTTATGAACCATAGTTATGAAACTGATTGGCTCTTTGGATGGATGTTTTGTGAA
AAAGTTGGTGTGCTTGGAAACTGCAAAGCATATGCTAAGAAAGTTATTTCGTTAATTCCA
ACTATCGGGTGGTCATGGAAATTTGCTGAATTTGTCTTCTTAGAAAGATCTTTTGATAAA
GATAAAGAAATTATAATTAAACAGCTTAATGAAATCTTTGATTATCCATCTCCAGTTTGG
CTTTTATTAAATGCAGAAGGCACTCGATTTACGAAATCAAAACATGAAGCTTCCGTAAAG
TTTGCTCAAGAACGAAATATGACTGTTCTTAATCATCATTTAATTCCCCGTACAAAAGGT
TTTACTGCTAGCTTGCCAGTATTGAAAAAGAAGTGTGCTGCTATTATGGATGTACAACTT
GCTTTTCATGAAGATGATGTTGACAAACCGACTGTCATAAATTTGTTAAGAGGTAAAAAA
ATTACGGGCCATATATATTTGAGGAGAGTGCCAATGTCAGATGTTCCTGACGATGAAGAG
CAAGCAGCTAAATGGCTTCATGAATTGTTTATTAGAAAGGATAAGTTGCAAACTAGTTTC
CATAAGACAGGAGACTTTTTCAAAGATACCGACATTGAACCCATCGAGCCAATAATAATT
AAACCAAGAAAAAGTAGTCTTCTAAATTGGGTTGGTTGGATTGCTGTCGCTCTCATTCCA
ATTTTGTATCTGCTGTTTTCTATGATTGCTAGTGGACAAGTATTTTATGTACTCATTGGT
GTTTCCATTACTGTAGCTTTTTACATGCTCTTTAATTATGCAATTGGAACGACTAAAATA
AGCAAAGGATCAGCTTATGGAGGTAGAACAAAAAACGAGCATAAAGACGAGAAGAAAGAA
CAATAG
>g7370.t3 Gene=g7370 Length=393
MTSLISTIKASTAVHLCFAISYFTSGLVINILQCLLFIFIKPFNKKLFRTLIYYLCYSFH
CQLVAIGEWWSGSTVKVYISKEDFKKAGTEHALLVMNHSYETDWLFGWMFCEKVGVLGNC
KAYAKKVISLIPTIGWSWKFAEFVFLERSFDKDKEIIIKQLNEIFDYPSPVWLLLNAEGT
RFTKSKHEASVKFAQERNMTVLNHHLIPRTKGFTASLPVLKKKCAAIMDVQLAFHEDDVD
KPTVINLLRGKKITGHIYLRRVPMSDVPDDEEQAAKWLHELFIRKDKLQTSFHKTGDFFK
DTDIEPIEPIIIKPRKSSLLNWVGWIAVALIPILYLLFSMIASGQVFYVLIGVSITVAFY
MLFNYAIGTTKISKGSAYGGRTKNEHKDEKKEQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g7370.t3 | CDD | cd07990 | LPLAT_LCLAT1-like | 64 | 260 | 3.09702E-63 |
| 3 | g7370.t3 | PANTHER | PTHR10983:SF8 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE DELTA | 9 | 384 | 1.1E-101 |
| 4 | g7370.t3 | PANTHER | PTHR10983 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED | 9 | 384 | 1.1E-101 |
| 2 | g7370.t3 | Pfam | PF01553 | Acyltransferase | 82 | 189 | 4.5E-11 |
| 1 | g7370.t3 | Pfam | PF16076 | Acyltransferase C-terminus | 246 | 325 | 2.3E-23 |
| 11 | g7370.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 14 | g7370.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 40 | - |
| 10 | g7370.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 41 | 318 | - |
| 13 | g7370.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 319 | 341 | - |
| 12 | g7370.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 342 | 346 | - |
| 15 | g7370.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 347 | 367 | - |
| 9 | g7370.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 368 | 393 | - |
| 8 | g7370.t3 | SMART | SM00563 | plsc_2 | 92 | 214 | 5.4E-15 |
| 6 | g7370.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 18 | 40 | - |
| 5 | g7370.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 319 | 341 | - |
| 7 | g7370.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 368 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13523 (lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase [EC:2.3.1.51 2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
