Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase delta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7370 g7370.t4 TSS g7370.t4 23415793 23415793
chr_2 g7370 g7370.t4 isoform g7370.t4 23415922 23417035
chr_2 g7370 g7370.t4 exon g7370.t4.exon1 23415922 23415933
chr_2 g7370 g7370.t4 exon g7370.t4.exon2 23416358 23416582
chr_2 g7370 g7370.t4 cds g7370.t4.CDS1 23416399 23416582
chr_2 g7370 g7370.t4 exon g7370.t4.exon3 23416650 23416739
chr_2 g7370 g7370.t4 cds g7370.t4.CDS2 23416650 23416739
chr_2 g7370 g7370.t4 exon g7370.t4.exon4 23416799 23417035
chr_2 g7370 g7370.t4 cds g7370.t4.CDS3 23416799 23417034
chr_2 g7370 g7370.t4 TTS g7370.t4 23417944 23417944

Sequences

>g7370.t4 Gene=g7370 Length=564
ATATATAGGTAAATTTTCGCGCACAAACATTTTTGTACAAAGAAGTATCTAACATGACTT
CGTTAATAAGTACAATTAAAGCCTCAACAGCTGTTCATTTGTGCTTTGCAATTTCTTATT
TCACATCAGGACTCGTAATAAACATTCTTCAATGTTTATTGTTCATCTTTATCAAGCCAT
TTAATAAGAAGCTATTTAGAACTTTAATATACTATTTATGTTATTCATTCCATTGCCAAT
TAGTCGCAATTGGAGAGTGGTGGAGTGGAAGCACAGTTAAAGTTTATATTTCAAAGGAGG
ATTTTAAGAAAGCAGGCACTGAGCATGCATTACTGGTTATGAACCATAGTTATGAAACTG
ATTGGCTCTTTGGATGGATGTTTTGTGAAAAAGTTGGTGTGCTTGGAAACTGCAAAGCAT
ATGCTAAGAAAGTTATTTCGTTAATTCCAACTATCGGGTGGTCATGGAAATTTGCTGAAT
TTGTCTTCTTAGAAAGATCTTTTGATAAAGATAAAGAAATTATAATTAAACAGCTTAATG
AAATCTTTGATTATCCATCTCCAG

>g7370.t4 Gene=g7370 Length=170
MTSLISTIKASTAVHLCFAISYFTSGLVINILQCLLFIFIKPFNKKLFRTLIYYLCYSFH
CQLVAIGEWWSGSTVKVYISKEDFKKAGTEHALLVMNHSYETDWLFGWMFCEKVGVLGNC
KAYAKKVISLIPTIGWSWKFAEFVFLERSFDKDKEIIIKQLNEIFDYPSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7370.t4 CDD cd07990 LPLAT_LCLAT1-like 64 170 9.1535E-31
2 g7370.t4 PANTHER PTHR10983:SF8 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE DELTA 9 169 1.4E-43
3 g7370.t4 PANTHER PTHR10983 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 9 169 1.4E-43
1 g7370.t4 Pfam PF01553 Acyltransferase 82 159 2.0E-9
6 g7370.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
8 g7370.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 39 -
5 g7370.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 40 50 -
9 g7370.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 70 -
7 g7370.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 71 170 -
4 g7370.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 18 40 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed