General information for g7370.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma.
Parent gene
- The parent gene g7370 is located on chr_2: 23416798..23417766 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7370 | g7370.t7 | isoform | g7370.t7 | 23416651 | 23417766 |
| chr_2 | g7370 | g7370.t7 | exon | g7370.t7.exon1 | 23416651 | 23417766 |
| chr_2 | g7370 | g7370.t7 | TSS | g7370.t7 | 23416653 | 23416653 |
| chr_2 | g7370 | g7370.t7 | cds | g7370.t7.CDS1 | 23416810 | 23417544 |
| chr_2 | g7370 | g7370.t7 | TTS | g7370.t7 | 23417944 | 23417944 |
Sequences
>g7370.t7 Gene=g7370 Length=1116
ATTAGTCGCAATTGGAGAGTGGTGGAGTGGAAGCACAGTTAAAGTTTATATTTCAAAGGA
GGATTTTAAGAAAGCAGGCACTGAGCATGGTATGTATTTAAAAATTAAAATGATATAAAA
ATGCTATAAAAAATTGTTTTAATCCTAGCATTACTGGTTATGAACCATAGTTATGAAACT
GATTGGCTCTTTGGATGGATGTTTTGTGAAAAAGTTGGTGTGCTTGGAAACTGCAAAGCA
TATGCTAAGAAAGTTATTTCGTTAATTCCAACTATCGGGTGGTCATGGAAATTTGCTGAA
TTTGTCTTCTTAGAAAGATCTTTTGATAAAGATAAAGAAATTATAATTAAACAGCTTAAT
GAAATCTTTGATTATCCATCTCCAGTTTGGCTTTTATTAAATGCAGAAGGCACTCGATTT
ACGAAATCAAAACATGAAGCTTCCGTAAAGTTTGCTCAAGAACGAAATATGACTGTTCTT
AATCATCATTTAATTCCCCGTACAAAAGGTTTTACTGCTAGCTTGCCAGTATTGAAAAAG
AAGTGTGCTGCTATTATGGATGTACAACTTGCTTTTCATGAAGATGATGTTGACAAACCG
ACTGTCATAAATTTGTTAAGAGGTAAAAAAATTACGGGCCATATATATTTGAGGAGAGTG
CCAATGTCAGATGTTCCTGACGATGAAGAGCAAGCAGCTAAATGGCTTCATGAATTGTTT
ATTAGAAAGGATAAGTTGCAAACTAGTTTCCATAAGACAGGAGACTTTTTCAAAGATACC
GACATTGAACCCATCGAGCCAATAATAATTAAACCAAGAAAAAGTAGTCTTCTAAATTGG
GTTGGTTGGATTGCTGTAAGTTTTCGAATGAAAGTTAGAATTGATTTACTTTAATTAATT
TTTATTTTATTTTAGGTCGCTCTCATTCCAATTTTGTATCTGCTGTTTTCTATGATTGCT
AGTGGACAAGTATTTTATGTACTCATTGGTGTTTCCATTACTGTAGCTTTTTACATGCTC
TTTAATTATGCAATTGGAACGACTAAAATAAGCAAAGGATCAGCTTATGGAGGTAGAACA
AAAAACGAGCATAAAGACGAGAAGAAAGAACAATAG
>g7370.t7 Gene=g7370 Length=244
MNHSYETDWLFGWMFCEKVGVLGNCKAYAKKVISLIPTIGWSWKFAEFVFLERSFDKDKE
IIIKQLNEIFDYPSPVWLLLNAEGTRFTKSKHEASVKFAQERNMTVLNHHLIPRTKGFTA
SLPVLKKKCAAIMDVQLAFHEDDVDKPTVINLLRGKKITGHIYLRRVPMSDVPDDEEQAA
KWLHELFIRKDKLQTSFHKTGDFFKDTDIEPIEPIIIKPRKSSLLNWVGWIAVSFRMKVR
IDLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7370.t7 | CDD | cd07990 | LPLAT_LCLAT1-like | 1 | 165 | 0 |
| 3 | g7370.t7 | PANTHER | PTHR10983:SF24 | MIP21173P-RELATED | 1 | 215 | 0 |
| 4 | g7370.t7 | PANTHER | PTHR10983 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED | 1 | 215 | 0 |
| 2 | g7370.t7 | Pfam | PF01553 | Acyltransferase | 1 | 94 | 0 |
| 1 | g7370.t7 | Pfam | PF16076 | Acyltransferase C-terminus | 151 | 230 | 0 |
| 5 | g7370.t7 | SMART | SM00563 | plsc_2 | 1 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
