General information for g7372.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Major facilitator superfamily domain-containing protein 8.
Parent gene
- The parent gene g7372 is located on chr_2: 23434016..23441675 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7372 | g7372.t1 | TTS | g7372.t1 | 23431653 | 23431653 |
| chr_2 | g7372 | g7372.t1 | isoform | g7372.t1 | 23431836 | 23434028 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon1 | 23431836 | 23432058 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS1 | 23431836 | 23432058 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon2 | 23432119 | 23432190 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS2 | 23432119 | 23432190 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon3 | 23432251 | 23432344 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS3 | 23432251 | 23432344 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon4 | 23432425 | 23433105 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS4 | 23432425 | 23433105 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon5 | 23433178 | 23433445 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS5 | 23433178 | 23433445 |
| chr_2 | g7372 | g7372.t1 | exon | g7372.t1.exon6 | 23433840 | 23434028 |
| chr_2 | g7372 | g7372.t1 | cds | g7372.t1.CDS6 | 23433840 | 23434028 |
| chr_2 | g7372 | g7372.t1 | TSS | g7372.t1 | 23434811 | 23434811 |
Sequences
>g7372.t1 Gene=g7372 Length=1527
ATGGAAAGTTCTAGTGAAAATAAAAAGAAGGAATCTATAGCTAATGGAAATGGCACAATT
AAGCCTCTTGAAACTTCAGAGGAAGAAAAAGAGAGATATAAATCATTGTACATAATTTAT
TTCACACTTTTCCTTCAATCTTTGGGTCTTGCGGTTTGCATGACTGGAATTTGGCCTTAT
GTCAGTAAACTTGATCCAGGAACAACAAAGGAATTTTATTCGTTAATAGTAGCAGCTAAT
CCACTAGGTCAATTCATATTCTCTCCTTTGATTGGACTTTGGCAGAATAAGTCTGCATCA
ATTCGTTGGCCAATTATAACATCATTAATTATCTTCATAATTTCAAACGCTTTCTATTCA
TCACTTGATATGCTAGTTGGCTATGGAGTCAAATATTGGATGCTAATAATTCGATTTTTT
ACTGGCGTTGCTTCGGCAAATATTGCTGTCGGTAGAGGCTATATATCAGCTGCAACAAAA
GTAGAAGAGAGAACACATGTTCTATCAATGGCGTCGCTCTCACAAGTCGGCGGTTTCATT
GCTGGTCCTTTATTGCAAGCTGTTTTTACTGCAATTGGTGAAGGATATGTTTTGTCTTCT
GGTTATCATATTTCCATGTACACTGTGCCCGGTTTGATTAACACAATTCTCGGTGCTATA
AATATATTTTTCTTTCTCCCTCACATTTTTGTTGATCATAATATCGCGGTTCGTGAACAA
ATGGCATTACAAGGAAAAGAATCAGCCAAAGAAACATATAAGTCTGTTAAAATTGATTAC
TTAGTGACTTGTGCATTGATCTTCTCTTACTTTATTGTTTGTGTTAATCTTGTTTTACTC
GAGAGTCTCGGAACGCCTTTGACAATGGATCAATTTGGATTCTCTCGAAAAGATACGCTT
AAGTGGAACGGAATCCTTGTGGGAATTGGGGCTTTTGTGTCGTGTGTAATATTTTGTTTG
TTGCCTCGTCTTTCAAAGATCTTAAAAGAAATTGATATACTCATATGGGGAGGTATGTTC
ATAGCGGTTATTGGAAAAATTATCTATATTCCATATCGTGGTGACCCGCCACCAATTGCT
GATGAAAACTTCAATTCAACAATATTTTTAAATAATGACAATTCAACTGAAATATTGGGT
TGTCCAGTGAAGACTCAGAGTTGGTGTGCAACTACTTCACATGCCCTTGGTATACCTGAA
TTTGTTATTGGATACTTTTTTGGTGTTATAGGTTATCCCGTTGGTGTCACTTTAATTCAA
ACGCTTTTTTCGAAAATTCTCGGAGCAAGACCACAAGGCACATGGATGGGAATAATGTTA
GCAGCAGGTAGTATGAGTCGAATTGTGGGTCCTATTGTTATCGTTGCATCTTACACTGAA
TTTGGATTGGGATACACATTTGCATGGATAACAATCTTTATGTGCATTCCTATGATTCTT
CTCTATTCTTTACGTAATCGTCTCATTACTGATACTCCAAAGGCAGACAACATTAATATG
ACTGATGTAAAGTCTCAAACTGCGTAG
>g7372.t1 Gene=g7372 Length=508
MESSSENKKKESIANGNGTIKPLETSEEEKERYKSLYIIYFTLFLQSLGLAVCMTGIWPY
VSKLDPGTTKEFYSLIVAANPLGQFIFSPLIGLWQNKSASIRWPIITSLIIFIISNAFYS
SLDMLVGYGVKYWMLIIRFFTGVASANIAVGRGYISAATKVEERTHVLSMASLSQVGGFI
AGPLLQAVFTAIGEGYVLSSGYHISMYTVPGLINTILGAINIFFFLPHIFVDHNIAVREQ
MALQGKESAKETYKSVKIDYLVTCALIFSYFIVCVNLVLLESLGTPLTMDQFGFSRKDTL
KWNGILVGIGAFVSCVIFCLLPRLSKILKEIDILIWGGMFIAVIGKIIYIPYRGDPPPIA
DENFNSTIFLNNDNSTEILGCPVKTQSWCATTSHALGIPEFVIGYFFGVIGYPVGVTLIQ
TLFSKILGARPQGTWMGIMLAAGSMSRIVGPIVIVASYTEFGLGYTFAWITIFMCIPMIL
LYSLRNRLITDTPKADNINMTDVKSQTA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 42 | g7372.t1 | CDD | cd17326 | MFS_MFSD8 | 36 | 489 | 8.67479E-93 |
| 2 | g7372.t1 | PANTHER | PTHR23510:SF3 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 8 | 24 | 489 | 2.8E-121 |
| 3 | g7372.t1 | PANTHER | PTHR23510 | INNER MEMBRANE TRANSPORT PROTEIN YAJR | 24 | 489 | 2.8E-121 |
| 1 | g7372.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 40 | 349 | 6.0E-24 |
| 21 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 36 | - |
| 37 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 60 | - |
| 24 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 61 | 71 | - |
| 31 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 94 | - |
| 19 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 95 | 100 | - |
| 41 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 120 | - |
| 28 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 121 | 131 | - |
| 38 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 132 | 155 | - |
| 18 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 156 | 166 | - |
| 36 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 192 | - |
| 29 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 193 | 211 | - |
| 33 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 212 | 231 | - |
| 23 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 232 | 259 | - |
| 39 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 260 | 280 | - |
| 27 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 281 | 299 | - |
| 35 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 300 | 321 | - |
| 22 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 322 | 332 | - |
| 40 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 352 | - |
| 26 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 353 | 401 | - |
| 30 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 402 | 423 | - |
| 20 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 424 | 434 | - |
| 34 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 435 | 458 | - |
| 25 | g7372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 459 | 463 | - |
| 32 | g7372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 484 | - |
| 17 | g7372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 485 | 508 | - |
| 16 | g7372.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 28 | 488 | 2.49E-33 |
| 4 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 62 | - |
| 5 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 94 | - |
| 15 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 119 | - |
| 9 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 156 | - |
| 13 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 176 | 198 | - |
| 8 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 230 | - |
| 10 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 260 | 282 | - |
| 11 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 302 | 321 | - |
| 12 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 352 | - |
| 14 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 401 | 423 | - |
| 7 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 435 | 457 | - |
| 6 | g7372.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 462 | 484 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
