Gene loci information

Transcript annotation

  • This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7463 g7463.t15 TTS g7463.t15 23882765 23882765
chr_2 g7463 g7463.t15 isoform g7463.t15 23883507 23884935
chr_2 g7463 g7463.t15 exon g7463.t15.exon1 23883507 23883632
chr_2 g7463 g7463.t15 cds g7463.t15.CDS1 23883508 23883632
chr_2 g7463 g7463.t15 exon g7463.t15.exon2 23883708 23883902
chr_2 g7463 g7463.t15 cds g7463.t15.CDS2 23883708 23883902
chr_2 g7463 g7463.t15 exon g7463.t15.exon3 23883974 23884094
chr_2 g7463 g7463.t15 cds g7463.t15.CDS3 23883974 23884094
chr_2 g7463 g7463.t15 exon g7463.t15.exon4 23884154 23884511
chr_2 g7463 g7463.t15 cds g7463.t15.CDS4 23884154 23884511
chr_2 g7463 g7463.t15 exon g7463.t15.exon5 23884671 23884699
chr_2 g7463 g7463.t15 cds g7463.t15.CDS5 23884671 23884699
chr_2 g7463 g7463.t15 exon g7463.t15.exon6 23884764 23884842
chr_2 g7463 g7463.t15 cds g7463.t15.CDS6 23884764 23884842
chr_2 g7463 g7463.t15 exon g7463.t15.exon7 23884910 23884935
chr_2 g7463 g7463.t15 cds g7463.t15.CDS7 23884910 23884935
chr_2 g7463 g7463.t15 TSS g7463.t15 23885222 23885222

Sequences

>g7463.t15 Gene=g7463 Length=934
ATGGAATTAAATAATAATCCGATAAGAGATGAAGAGCTAGAAACAGCAATAGCCTTGGTT
CCAAAAAAAGAAGCTTCAAAAAAAGAAGAAGATTATGATCCACATAAACATCGTAATGTT
GCGCATCCAACTAGTAATTTCGATACGCTTGCACACTTGCTCAAAGGATGTTTGGGAACT
GGCATCTTAGCAATGCATGAAGCATTCAGAAATGCTGGATGGCTCAATGGTTTAATAAGT
ATGGCACTTATTGGATTTGTTTGTACATATTGTTTTCAAATTTTAATCAAGGCTCAATAT
GCCTTGTGTAAAAAACATCGTCGACCAATTTTATCTTATCCAGAGAGCATGAAGCTCGCT
CTTGAACAAGGTCCTGCTGCACTTAAATGGATTGCACCATCAGCAGTTATCGTTACAGAT
GGTTTTTTGATAATTTATCAGCTTGGTGTGTGCATTTGTTATATTGTTTTTGTCGCGGCA
AATGTTCAACTGATTGTTAAAGAATTTTATCAGTTTTATGATATTAAGTATATAATGTTA
TGGATATTTATTCCTATGCTTGCAATCAATTGCATCAAGAATCTCAAAATCCTTGCGCCA
TTTTCGACAGCGGCAAATGCCATAACATTTGTCGGTCTAGGTCTGGTGCTCTATTACGTT
TTTGACGATTTACCTTCATTGTCGGAACGACCTGCATTTGGCCCTATTGAATCATATCCG
CTCTATTTTGGAACTGTTTTGTTTGCACTTGAAGCCGTAGGAGTTTTTATAGCACTCGAG
GCTAATATGGAAAAGCCAAAAAATTTCGTATCGAAATTTGGTGTTTTAAATTCCGGCATG
ACAATTGTAACTATATTATACGGTTTCGTGGGATTTTTTGGTTATTTAAAATATGGTGAA
AAGTCAAAAGACAGTATCACTTTAAGTTTACCAG

>g7463.t15 Gene=g7463 Length=311
MELNNNPIRDEELETAIALVPKKEASKKEEDYDPHKHRNVAHPTSNFDTLAHLLKGCLGT
GILAMHEAFRNAGWLNGLISMALIGFVCTYCFQILIKAQYALCKKHRRPILSYPESMKLA
LEQGPAALKWIAPSAVIVTDGFLIIYQLGVCICYIVFVAANVQLIVKEFYQFYDIKYIML
WIFIPMLAINCIKNLKILAPFSTAANAITFVGLGLVLYYVFDDLPSLSERPAFGPIESYP
LYFGTVLFALEAVGVFIALEANMEKPKNFVSKFGVLNSGMTIVTILYGFVGFFGYLKYGE
KSKDSITLSLP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7463.t15 PANTHER PTHR22950:SF340 GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED 21 311 9.6E-115
3 g7463.t15 PANTHER PTHR22950 AMINO ACID TRANSPORTER 21 311 9.6E-115
1 g7463.t15 Pfam PF01490 Transmembrane amino acid transporter protein 43 311 6.6E-41
15 g7463.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 73 -
17 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
10 g7463.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 97 142 -
19 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 166 -
14 g7463.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 167 171 -
16 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 192 -
11 g7463.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 203 -
18 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 204 221 -
13 g7463.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 222 240 -
20 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 241 261 -
9 g7463.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 262 272 -
21 g7463.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 273 296 -
12 g7463.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 297 311 -
6 g7463.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
8 g7463.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
5 g7463.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 197 219 -
7 g7463.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 239 261 -
4 g7463.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 273 295 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values