Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7477 g7477.t10 isoform g7477.t10 23934529 23935422
chr_2 g7477 g7477.t10 exon g7477.t10.exon1 23934529 23935422
chr_2 g7477 g7477.t10 cds g7477.t10.CDS1 23934810 23934881
chr_2 g7477 g7477.t10 TTS g7477.t10 23935430 23935430
chr_2 g7477 g7477.t10 TSS g7477.t10 NA NA

Sequences

>g7477.t10 Gene=g7477 Length=894
ATGATAAATTCCGTGTCGCTTACAACTTAACTTATAAGACACTCGCTGGTCGTCAAAATG
TCGACACATCGAAATTTCGTCGTGCAATATGGAATTATATTCAGTGCATCTATGGAATCA
GACATGATGATTATGACTATGGCGAAATCAATCAACTTCTTGATCGTACTCTCAATTCAT
TCATCAAAACAGCTTGTTGCTTCCCAGAGCGAATAACAAAGCAAGATTATGACAATGTTC
TCGTGGAATTACTTGACAGTGAAAAAGTTCACGTTAATTTGATGATAATGGAGGCAAAAA
ATCAAGCGATATTGCTTTATGCATTGAGAGAAATAATGCGCTATATGCTATGATAAATTG
ATCTCATTTCATTTTGGATTCATTGAAGAAATTTGCTATTCATATTTGATCAAAAAATAC
AAAACACACAAAAAATTAATTAATTAATCCTAAAATATACTATTTTTACAAAATGCAGTA
AGTAAGTGTTCGTTGAGCTTTTATCGTACAAGTCTTGTGCGATAAGTTACAAGAAATAAA
TAAGTAATAAATGTCGATATTGTTAAGATGATTTTTTTAAGAAAGACGACGAAGAAGAAG
TAACAAAGAAATAATAATTATTATAAATATTTTTTCACCATAAATATGATAGAGTGTTAC
AATATATATACATTTATATATCTTATAGCTATTTGTGATGATAGATCGTATGATGTAAAA
GGAGAAGCGACATGTTTTTCTTCTTCAGTTTTCTTTTTTTTTATATTCGTTAAGAGGAAA
ATGTTGTTTTGTGATTTTTTTTCTATGAAGAAAACTAAGCGAGATAATTGATCAACACGT
GCCAAAATTTTAAGAAGAAAAAATAAAGAGAAAAAACGATGATTTCAAAGAATA

>g7477.t10 Gene=g7477 Length=23
MIMEAKNQAILLYALREIMRYML

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed