General information for g7477.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sestrin-like protein.
Parent gene
- The parent gene g7477 is located on chr_2: 23934529..23935422 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7477 | g7477.t3 | TSS | g7477.t3 | 23929439 | 23929439 |
| chr_2 | g7477 | g7477.t3 | isoform | g7477.t3 | 23929490 | 23934234 |
| chr_2 | g7477 | g7477.t3 | exon | g7477.t3.exon1 | 23929490 | 23929745 |
| chr_2 | g7477 | g7477.t3 | exon | g7477.t3.exon2 | 23931317 | 23931419 |
| chr_2 | g7477 | g7477.t3 | exon | g7477.t3.exon3 | 23933464 | 23934234 |
| chr_2 | g7477 | g7477.t3 | cds | g7477.t3.CDS1 | 23933594 | 23934070 |
| chr_2 | g7477 | g7477.t3 | TTS | g7477.t3 | NA | NA |
Sequences
>g7477.t3 Gene=g7477 Length=1130
TTGAAATAAATAAAAAAAAACTTTATTGACGAGTTAAATAAATTTTAATAGACGACGAAG
GTTTCTAATATAACGCAAATTGCGGAAGAAAAAAATAATACAACTAGTGAGTGAGAAATA
AAAAAAATAAATTGAAGGATAATAATTTTCTAATAACGTTAAAAGTGTCATAAATTTATT
TTTGTGTTCGTTTATAAAAATTCTTATTTGCAACTTTATGAAAGAGACAAAATTTTAATT
AAAAATATTCAGTGAGAAGGGAAGAGTGAAAGAAGAAAGCCAAGTCAAAGACAGTAAATT
ACAGCGCGATGGAGATAGAGTACTTTCCAGAACTTGAAATGGGACAGATTAATCATGATT
ACTATTTTAATAATAACAAGCCTTGGATAATGGAAAATGTTGATGTTTATGATCATGTCA
CAAAAGTAATTCGTTATCATCCGAAATACTTTGAACATTACATCAAAACACACAGATATT
TGATGTATGATGATGGACCATTGCCATTCACAGCAACACGTCATTAATTTGGCCATAATT
GCAGCAGCTCGCAACAAATGCAACTATCTCGTGAGTCTGCATGAAAAAGAGTTCTTGGCT
GAAGGAGGTGATACAAAATGGCTAAATGGACTCGAATTTATTCCACAAAAGTTGCGTGCC
ATTTACGACATCAATAAAATTCTTGCTCATCGTCCATGGCTCTTAACCAAAGAACACATT
GAGCGTTTGACGAAGGGCACAAATAGTTGGTCTTTGGCAGAAGTTGTTCATGCAATCGTC
ATTCTGGCACACTTTCATTCACTCTCATCTTTCGTATTCTCATGTGGTCTCAATCAGGAA
TTGGATGCTAGTCTTAAAATGAACCAGAATCACCAACAATCGAACCAGAACCAGAAATTA
AACCAAGTACTACGCCACCCTTCATTCAACGTCTTAAACTTGAACAGCAACGTATGCATC
AAATGATGAAGGAGCAGGAAGAGCAAAGTAAAAAAGTTCTTCAACAAAACAACTCAAATG
GAACTTCAAGTGACAACATTGAGATGCTTATGAAACGCATGCAAGATCTCTCAGAAAAAA
AGAAAGAATGCAGTGAAACTGAGCTGAGTAATCGTTTTAAAAATGTTGAG
>g7477.t3 Gene=g7477 Length=158
MMDHCHSQQHVINLAIIAAARNKCNYLVSLHEKEFLAEGGDTKWLNGLEFIPQKLRAIYD
INKILAHRPWLLTKEHIERLTKGTNSWSLAEVVHAIVILAHFHSLSSFVFSCGLNQELDA
SLKMNQNHQQSNQNQKLNQVLRHPSFNVLNLNSNVCIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7477.t3 | Gene3D | G3DSA:1.20.1290.10 | - | 9 | 129 | 9e-07 |
| 2 | g7477.t3 | PANTHER | PTHR12474 | P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN | 14 | 139 | 0e+00 |
| 1 | g7477.t3 | Pfam | PF04636 | PA26 p53-induced protein (sestrin) | 14 | 136 | 0e+00 |
| 3 | g7477.t3 | SUPERFAMILY | SSF69118 | AhpD-like | 14 | 117 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:1901031 | regulation of response to reactive oxygen species | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
