Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7477 g7477.t9 isoform g7477.t9 23933972 23935422
chr_2 g7477 g7477.t9 exon g7477.t9.exon1 23933972 23934240
chr_2 g7477 g7477.t9 cds g7477.t9.CDS1 23934058 23934240
chr_2 g7477 g7477.t9 exon g7477.t9.exon2 23934316 23935422
chr_2 g7477 g7477.t9 cds g7477.t9.CDS2 23934316 23934528
chr_2 g7477 g7477.t9 TTS g7477.t9 23935430 23935430
chr_2 g7477 g7477.t9 TSS g7477.t9 NA NA

Sequences

>g7477.t9 Gene=g7477 Length=1376
AATCACCAACAATCGAACCAGAACCAGAAATTAAACCAAGTACTACGCCACCCTTCATTC
AACGTCTTAAACTTGAACAGCAACGTATGCATCAAATGATGAAGGAGCAGGAAGAGCAAA
GTAAAAAAGTTCTTCAACAAAACAACTCAAATGGAACTTCAAGTGACAACATTGAGATGC
TTATGAAACGCATGCAAGATCTCTCAGAAAAAAAGAAAGAATGCAGTGAAACTGAGCTGA
GTAATCGTTTTAAAAATGTTGAGCTTCAGGCTGCACAATTGACAAAATCAACAGAATCAT
TGAATGCAGTTGAAGTTCCTCAATCGATAAGTCATTATGTAGAAGATCCAACTTATGCAT
ATCAAGATTTTGCTAGACGTGGAGCTATATTCCACATACTTTTCGAATCCAAGATTATTC
TTGGGATGATCATGGCTATTCACTTGTCAATCGTCTTTATAATGACGTTGGATTTCTGCT
AGATGATAAATTCCGTGTCGCTTACAACTTAACTTATAAGACACTCGCTGGTCGTCAAAA
TGTCGACACATCGAAATTTCGTCGTGCAATATGGAATTATATTCAGTGCATCTATGGAAT
CAGACATGATGATTATGACTATGGCGAAATCAATCAACTTCTTGATCGTACTCTCAATTC
ATTCATCAAAACAGCTTGTTGCTTCCCAGAGCGAATAACAAAGCAAGATTATGACAATGT
TCTCGTGGAATTACTTGACAGTGAAAAAGTTCACGTTAATTTGATGATAATGGAGGCAAA
AAATCAAGCGATATTGCTTTATGCATTGAGAGAAATAATGCGCTATATGCTATGATAAAT
TGATCTCATTTCATTTTGGATTCATTGAAGAAATTTGCTATTCATATTTGATCAAAAAAT
ACAAAACACACAAAAAATTAATTAATTAATCCTAAAATATACTATTTTTACAAAATGCAG
TAAGTAAGTGTTCGTTGAGCTTTTATCGTACAAGTCTTGTGCGATAAGTTACAAGAAATA
AATAAGTAATAAATGTCGATATTGTTAAGATGATTTTTTTAAGAAAGACGACGAAGAAGA
AGTAACAAAGAAATAATAATTATTATAAATATTTTTTCACCATAAATATGATAGAGTGTT
ACAATATATATACATTTATATATCTTATAGCTATTTGTGATGATAGATCGTATGATGTAA
AAGGAGAAGCGACATGTTTTTCTTCTTCAGTTTTCTTTTTTTTTATATTCGTTAAGAGGA
AAATGTTGTTTTGTGATTTTTTTTCTATGAAGAAAACTAAGCGAGATAATTGATCAACAC
GTGCCAAAATTTTAAGAAGAAAAAATAAAGAGAAAAAACGATGATTTCAAAGAATA

>g7477.t9 Gene=g7477 Length=131
MHQMMKEQEEQSKKVLQQNNSNGTSSDNIEMLMKRMQDLSEKKKECSETELSNRFKNVEL
QAAQLTKSTESLNAVEVPQSISHYVEDPTYAYQDFARRGAIFHILFESKIILGMIMAIHL
SIVFIMTLDFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7477.t9 Coils Coil Coil 29 49 -
3 g7477.t9 MobiDBLite mobidb-lite consensus disorder prediction 1 44 -
4 g7477.t9 MobiDBLite mobidb-lite consensus disorder prediction 14 31 -
1 g7477.t9 Pfam PF04636 PA26 p53-induced protein (sestrin) 7 100 8.7E-14
6 g7477.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 109 -
8 g7477.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 110 128 -
7 g7477.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 129 131 -
2 g7477.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 104 126 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:1901031 regulation of response to reactive oxygen species BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values