General information for g7534.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7534 is located on chr_2: 24379439..24383882 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7534 | g7534.t3 | isoform | g7534.t3 | 24379439 | 24383882 |
| chr_2 | g7534 | g7534.t3 | exon | g7534.t3.exon1 | 24379439 | 24380454 |
| chr_2 | g7534 | g7534.t3 | cds | g7534.t3.CDS1 | 24379622 | 24380017 |
| chr_2 | g7534 | g7534.t3 | exon | g7534.t3.exon2 | 24383868 | 24383882 |
| chr_2 | g7534 | g7534.t3 | TSS | g7534.t3 | NA | NA |
| chr_2 | g7534 | g7534.t3 | TTS | g7534.t3 | NA | NA |
Sequences
>g7534.t3 Gene=g7534 Length=1031
AATGAATTTTTTATTTGCATGACTATATCGCATAAAATCTGCATACTTGTAGACTATTAG
AACCTTCAGTCATTCAAAATGCCACCTTGACGATTGATAATCGTTTTGTATAATCACGAT
GATCATGCTCTTTAATTTCATGCAATTAAACAAATGTAATCAAGTTCTGAAAAGAATTAT
CTAATATATAAAAGGTAGAACTGATGAAAATTACATTCTTATTGTGTTCTGTACTCTCGG
TGAATAATCATGTTGTTTCGAGTATTTTTTTGTACGGTTGTTTTGACTTTTGTCATGTGT
GCTGAAAATTTTGATAAAATTAATGTGGTGTTAAGTAGAAATCAAAGAAATGCACATGAG
CATCTTCTTTTAAGAAGTTTCGATGTAGTTCCTGCAAATGTAAGAATTAAATAAAGAAAA
AATTGAAGAATATAAGCAATTAAATGTGAAATATGTATATATATTTAAAGCCGGAACCAA
GTTGGAAAGCTAGTGCGATACTTTCAAGTGGAAATTCAGATGAGGCAGAGCAGTCTGAAG
GAGGAGTTAGTGGTGAAATTACATTCAAACAATGGAATTTTAATGCACCAATTCAAGTTT
ATGCAAATATTTCTGGTTTAAAACCAGGCAAGCATGCTATTCATATACATGCATTTGGCG
ATGTAACTGATGGCTGCAAATCGACTGGTCCACACTTTCGACATAGCATTGTAGGCAATG
TAGAAGCTAATGAGGAAGGAAAAGTTGACATAAAATTCAATACACTCTCATTGAGTCTTT
TTGGATTATCAGGTGTTTTAGGTCGATCAGTTGTTGTACATGAAAAACCATCACGTAAGA
TTCCGTGAATGAAAAACTAGTGTCATAAAATTCTATCGATTATTTTTTCAGAATTTTTAA
GATATCCTGATATTTTCAATCCTGAGTCACAATTTGTTGACCTTGGCGTAAGCTATCAAA
CAGAAGAAGATTCAGTAGGCGAACGTTTGTCATGCGGAATCATAACTATCACAAGCAACA
TTTCAAACTAA
>g7534.t3 Gene=g7534 Length=131
MYIYLKPEPSWKASAILSSGNSDEAEQSEGGVSGEITFKQWNFNAPIQVYANISGLKPGK
HAIHIHAFGDVTDGCKSTGPHFRHSIVGNVEANEEGKVDIKFNTLSLSLFGLSGVLGRSV
VVHEKPSRKIP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7534.t3 | Gene3D | G3DSA:2.60.40.200 | - | 24 | 129 | 3.1E-26 |
| 3 | g7534.t3 | PANTHER | PTHR10003 | SUPEROXIDE DISMUTASE CU-ZN -RELATED | 29 | 83 | 9.7E-22 |
| 5 | g7534.t3 | PANTHER | PTHR10003:SF31 | SUPEROXIDE DISMUTASE [CU-ZN] 3 | 29 | 83 | 9.7E-22 |
| 2 | g7534.t3 | PANTHER | PTHR10003 | SUPEROXIDE DISMUTASE CU-ZN -RELATED | 87 | 126 | 9.7E-22 |
| 4 | g7534.t3 | PANTHER | PTHR10003:SF31 | SUPEROXIDE DISMUTASE [CU-ZN] 3 | 87 | 126 | 9.7E-22 |
| 1 | g7534.t3 | Pfam | PF00080 | Copper/zinc superoxide dismutase (SODC) | 29 | 126 | 5.5E-20 |
| 7 | g7534.t3 | ProSitePatterns | PS00087 | Copper/Zinc superoxide dismutase signature 1. | 62 | 72 | - |
| 6 | g7534.t3 | SUPERFAMILY | SSF49329 | Cu,Zn superoxide dismutase-like | 28 | 126 | 1.13E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006801 | superoxide metabolic process | BP |
| GO:0004784 | superoxide dismutase activity | MF |
| GO:0046872 | metal ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
