Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g7546 | g7546.t1 | TTS | g7546.t1 | 24457655 | 24457655 |
chr_2 | g7546 | g7546.t1 | isoform | g7546.t1 | 24457824 | 24459128 |
chr_2 | g7546 | g7546.t1 | exon | g7546.t1.exon1 | 24457824 | 24458024 |
chr_2 | g7546 | g7546.t1 | cds | g7546.t1.CDS1 | 24457824 | 24458024 |
chr_2 | g7546 | g7546.t1 | exon | g7546.t1.exon2 | 24458083 | 24458460 |
chr_2 | g7546 | g7546.t1 | cds | g7546.t1.CDS2 | 24458083 | 24458460 |
chr_2 | g7546 | g7546.t1 | exon | g7546.t1.exon3 | 24458603 | 24458664 |
chr_2 | g7546 | g7546.t1 | cds | g7546.t1.CDS3 | 24458603 | 24458664 |
chr_2 | g7546 | g7546.t1 | TSS | g7546.t1 | 24458694 | 24458694 |
chr_2 | g7546 | g7546.t1 | exon | g7546.t1.exon4 | 24459122 | 24459128 |
chr_2 | g7546 | g7546.t1 | cds | g7546.t1.CDS4 | 24459122 | 24459128 |
>g7546.t1 Gene=g7546 Length=648
ATGACAAAAAGTAATTTTCATAATAATTTAATTAATTCGCAAAGTACACTCTATTATAAA
ATAATTAAGATGAACAAGCTAGTGAAATGTCTTGCATTATTCTTCTTTGCATCAATGGTG
ATGGCTACTGATTCAGGAGATTCTCGAGCACGATTATTAGTTTCAAAACAAATCCTCAAT
AAATATCTTGTTGAACAACGCGATGTCATGGTAAAATATACTTTATTCAATATTGGAAAT
GGTGCCGCCACACACGTCAGCTTAGAAGATCAAGGTTTTCCAGCTGAAGCTTTTGATTTA
GTCAGCGGAAAGTTGGAAGTTCAAATTGATAGAATTGCACCAGCTACAAATGTCACTCAT
GTAGTTGTTGTTCGACCAAGAGCGCACGGATACTTTAACTTCACTGCAGCTGCTATTAGC
TACCGTCCAGTTGAATCATCACCAGCTCTTCAATACGCAATTAGTTCAGAGCCAGGCGAA
GGTGGAATTATTAATTTGGCTCAATTCAACAAACAATTCTCATCACATCTCTTTGATTGG
ATTGCTTTCGTCATCATGTGTCTCCCAACAGTAGCCATTCCATACAGTTTATTCTACAAA
TCAAAGACAAAGTACGAGCTCTTGGCACAAAAGAAAAAGGCCAACTAA
>g7546.t1 Gene=g7546 Length=215
MTKSNFHNNLINSQSTLYYKIIKMNKLVKCLALFFFASMVMATDSGDSRARLLVSKQILN
KYLVEQRDVMVKYTLFNIGNGAATHVSLEDQGFPAEAFDLVSGKLEVQIDRIAPATNVTH
VVVVRPRAHGYFNFTAAAISYRPVESSPALQYAISSEPGEGGIINLAQFNKQFSSHLFDW
IAFVIMCLPTVAIPYSLFYKSKTKYELLAQKKKAN
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
3 | g7546.t1 | PANTHER | PTHR12861:SF3 | TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA | 24 | 212 | 7.3E-50 |
4 | g7546.t1 | PANTHER | PTHR12861 | TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT | 24 | 212 | 7.3E-50 |
14 | g7546.t1 | PIRSF | PIRSF016400 | TRAP-beta | 24 | 214 | 7.2E-68 |
2 | g7546.t1 | Pfam | PF05753 | Translocon-associated protein beta (TRAPB) | 33 | 207 | 4.9E-63 |
9 | g7546.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 42 | - |
10 | g7546.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 26 | - |
11 | g7546.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 27 | 37 | - |
13 | g7546.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 38 | 42 | - |
8 | g7546.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 43 | 176 | - |
12 | g7546.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 198 | - |
7 | g7546.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 199 | 215 | - |
1 | g7546.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 42 | - |
6 | g7546.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
5 | g7546.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 199 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005783 | endoplasmic reticulum | CC |
GO:0016021 | integral component of membrane | CC |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.