General information for g755.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycerol-3-phosphate acyltransferase 4.
Parent gene
- The parent gene g755 is located on chr_3: 5744263..5745920 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g755 | g755.t1 | TTS | g755.t1 | 5742352 | 5742352 |
| chr_3 | g755 | g755.t1 | isoform | g755.t1 | 5742541 | 5745920 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon1 | 5742541 | 5742979 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS1 | 5742541 | 5742979 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon2 | 5743039 | 5743154 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS2 | 5743039 | 5743154 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon3 | 5743445 | 5743681 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS3 | 5743445 | 5743681 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon4 | 5744261 | 5744518 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS4 | 5744261 | 5744518 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon5 | 5744594 | 5744917 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS5 | 5744594 | 5744917 |
| chr_3 | g755 | g755.t1 | exon | g755.t1.exon6 | 5745783 | 5745920 |
| chr_3 | g755 | g755.t1 | cds | g755.t1.CDS6 | 5745783 | 5745920 |
| chr_3 | g755 | g755.t1 | TSS | g755.t1 | 5746034 | 5746034 |
Sequences
>g755.t1 Gene=g755 Length=1512
ATGGCGCTGTTAGAATTAGCCAGTTCACTGCTTCTGGCTCCTTTTAGTGTTTTAATTGTA
GTTATTTTATTAGCATCATTCGGAAAATCATTTGGAATTAGAAGACTTTATGTGCGGATG
CTAATAAGACTATTTGAGTATGGTCGTGCAAATATTGAGTCAGCAATAAGAAAAGACAGT
GTTGATAGAGGAAATGAAATTGAACATGAGATTGGAGAACAAGAAGAAAAGACTATCAAG
TTGAATTTAAACAGCAAAGACAAAATATTGCCAAAAACAAATGGACTGGTTAACAAGTCA
GGTCAAAATGGCCACATTAGTAATGGCACTTCTGTTATTACAAAAGAATCGCTCATTCTT
GTGCCCGATAAAGCAATTCAAACAACAACAGTGACAACGACAACTACAACAAGTATAAAT
CATAAAGAGCAATCACAAGTGATATCAGAAAACAACAATGAGGAAATTAAAGATGATAAA
CCACGCGATTTTAAGCTGGATGATTGTTTTGAATATATAAAATCAGGCATGGAAGCAATT
ATTGAAGATGAAGTAACTTCAAGATTTGAAGCTGAAGAGCTTAAGAATTGGAATTTGTTG
ACTCGTACTAATAGAGGATATGAATTCATATCATGGAAACTAACAGTCATATGGTTCATA
GGATTTCTCATAAGATATTTATTTCTTTTGCCTCTAAGGATAGTTATATGTTTTATTGGG
GTATTATGGCTAACAATTTGCACGGCAGTTGTGGGCTGGACATTACCAGAAGGTGACTTA
AAACGACAAATTGTGAGCATCACACTCATTCATTGTTCGGAATTTCTCTCAAACGCAATC
TCATCAGTAGTTAATTATCATAATCCTGAAAATCGACCCGTTAACGGAATTTGTGTAGCA
AATCACACTTCACCAATCGACGCATTAATGTTAATGTGTGATAATTGTTATTCACTGATT
GGTCAACGACATGGTGGATTTTTAGGAATTTTACAAAGAGCTTTAGCTCGTGCATCACCA
CATATTTGGTTTGAGAGAAATGAAGCAAAGGATAGATCTGCTGTTGCAGCTAGGCTACGA
GAACATGTCTCAGATCCAAAAAATCCTCCTATTCTTATTTTTCCGGAAGGAACATGCATC
AATAACACTTCTGTCATGCAATTCAAAAAAGGAAGTTTTGAAGTTGGTGGTGTCATTTAT
CCAGTTGCCATAAAATATGATGCTCGTTTTGGTGATGCTTTTTGGAACAGTTCAAGATAC
TCAATGATGCAGTATCTTTACATGATGATGACTTCATGGGCTATTGTTTGTGATGTTTGG
TATCTGCCGCCTATGTATTGCGAGGAGGGTGAGTCAGCTATAGATTTTGCGAATCGTGTT
AAAAGAACGATTGCAAAACAAGGTGGTCTTGTTGATCTCATGTGGGATGGTCAGTTAAAA
CGAATGAAAGCTAAAAAAGAATGGAAAGAATTGCAGCAAGAAAAATTCGCAGAGCGACTT
AAAGGAGATTAG
>g755.t1 Gene=g755 Length=503
MALLELASSLLLAPFSVLIVVILLASFGKSFGIRRLYVRMLIRLFEYGRANIESAIRKDS
VDRGNEIEHEIGEQEEKTIKLNLNSKDKILPKTNGLVNKSGQNGHISNGTSVITKESLIL
VPDKAIQTTTVTTTTTTSINHKEQSQVISENNNEEIKDDKPRDFKLDDCFEYIKSGMEAI
IEDEVTSRFEAEELKNWNLLTRTNRGYEFISWKLTVIWFIGFLIRYLFLLPLRIVICFIG
VLWLTICTAVVGWTLPEGDLKRQIVSITLIHCSEFLSNAISSVVNYHNPENRPVNGICVA
NHTSPIDALMLMCDNCYSLIGQRHGGFLGILQRALARASPHIWFERNEAKDRSAVAARLR
EHVSDPKNPPILIFPEGTCINNTSVMQFKKGSFEVGGVIYPVAIKYDARFGDAFWNSSRY
SMMQYLYMMMTSWAIVCDVWYLPPMYCEEGESAIDFANRVKRTIAKQGGLVDLMWDGQLK
RMKAKKEWKELQQEKFAERLKGD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g755.t1 | CDD | cd07991 | LPLAT_LPCAT1-like | 283 | 481 | 1.16453E-98 |
| 2 | g755.t1 | PANTHER | PTHR23063 | PHOSPHOLIPID ACYLTRANSFERASE | 110 | 501 | 1.3E-166 |
| 3 | g755.t1 | PANTHER | PTHR23063:SF2 | ACYLTRANSFERASE-LIKE | 110 | 501 | 1.3E-166 |
| 1 | g755.t1 | Pfam | PF01553 | Acyltransferase | 284 | 404 | 3.6E-20 |
| 12 | g755.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 17 | g755.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 27 | - |
| 10 | g755.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 28 | 208 | - |
| 16 | g755.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 209 | 228 | - |
| 11 | g755.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 229 | 233 | - |
| 15 | g755.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 255 | - |
| 9 | g755.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 256 | 424 | - |
| 14 | g755.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 425 | 442 | - |
| 13 | g755.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 443 | 503 | - |
| 8 | g755.t1 | SMART | SM00563 | plsc_2 | 296 | 407 | 1.2E-26 |
| 7 | g755.t1 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 220 | 446 | 1.28E-6 |
| 6 | g755.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 4 | g755.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 209 | 228 | - |
| 5 | g755.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 232 | 254 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13506 (glycerol-3-phosphate O-acyltransferase 3/4)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
