General information for g755.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycerol-3-phosphate acyltransferase 3-like.
Parent gene
- The parent gene g755 is located on chr_3: 5744263..5745920 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g755 | g755.t9 | TTS | g755.t9 | 5742352 | 5742352 |
| chr_3 | g755 | g755.t9 | isoform | g755.t9 | 5742541 | 5745920 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon1 | 5742541 | 5742979 |
| chr_3 | g755 | g755.t9 | cds | g755.t9.CDS1 | 5742541 | 5742979 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon2 | 5743039 | 5743154 |
| chr_3 | g755 | g755.t9 | cds | g755.t9.CDS2 | 5743039 | 5743154 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon3 | 5743445 | 5743551 |
| chr_3 | g755 | g755.t9 | cds | g755.t9.CDS3 | 5743445 | 5743474 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon4 | 5743610 | 5743681 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon5 | 5744261 | 5744518 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon6 | 5744594 | 5744917 |
| chr_3 | g755 | g755.t9 | exon | g755.t9.exon7 | 5745783 | 5745920 |
| chr_3 | g755 | g755.t9 | TSS | g755.t9 | 5746034 | 5746034 |
Sequences
>g755.t9 Gene=g755 Length=1454
ATGGCGCTGTTAGAATTAGCCAGTTCACTGCTTCTGGCTCCTTTTAGTGTTTTAATTGTA
GTTATTTTATTAGCATCATTCGGAAAATCATTTGGAATTAGAAGACTTTATGTGCGGATG
CTAATAAGACTATTTGAGTATGGTCGTGCAAATATTGAGTCAGCAATAAGAAAAGACAGT
GTTGATAGAGGAAATGAAATTGAACATGAGATTGGAGAACAAGAAGAAAAGACTATCAAG
TTGAATTTAAACAGCAAAGACAAAATATTGCCAAAAACAAATGGACTGGTTAACAAGTCA
GGTCAAAATGGCCACATTAGTAATGGCACTTCTGTTATTACAAAAGAATCGCTCATTCTT
GTGCCCGATAAAGCAATTCAAACAACAACAGTGACAACGACAACTACAACAAGTATAAAT
CATAAAGAGCAATCACAAGTGATATCAGAAAACAACAATGAGGAAATTAAAGATGATAAA
CCACGCGATTTTAAGCTGGATGATTGTTTTGAATATATAAAATCAGGCATGGAAGCAATT
ATTGAAGATGAAGTAACTTCAAGATTTGAAGCTGAAGAGCTTAAGAATTGGAATTTGTTG
ACTCGTACTAATAGAGGATATGAATTCATATCATGGAAACTAACAGTCATATGGTTCATA
GGATTTCTCATAAGATATTTATTTCTTTTGCCTCTAAGGATAGTTATATGTTTTATTGGG
GTATTATGGCTAACAATTTGCACGGCAGTTGTGGGCTGGACATTACCAGAAGGTGACTTA
AAACGACAAATTTTAATTATCATAATCCTGAAAATCGACCCGTTAACGGAATTTGTGTAG
CAAATCACACTTCACCAATCGACGCATTAATGTTAATGTGTGATAATTGTTATTCACTGA
TTGGTCAACGACATGGTGGATTTTTAGGAATTTTACAAAGAGCTTTAGCTCGTGCATCAC
CACATATTTGGTTTGAGAGAAATGAAGCAAAGGATAGATCTGCTGTTGCAGCTAGGCTAC
GAGAACATGTCTCAGATCCAAAAAATCCTCCTATTCTTATTTTTCCGGAAGGAACATGCA
TCAATAACACTTCTGTCATGCAATTCAAAAAAGGAAGTTTTGAAGTTGGTGGTGTCATTT
ATCCAGTTGCCATAAAATATGATGCTCGTTTTGGTGATGCTTTTTGGAACAGTTCAAGAT
ACTCAATGATGCAGTATCTTTACATGATGATGACTTCATGGGCTATTGTTTGTGATGTTT
GGTATCTGCCGCCTATGTATTGCGAGGAGGGTGAGTCAGCTATAGATTTTGCGAATCGTG
TTAAAAGAACGATTGCAAAACAAGGTGGTCTTGTTGATCTCATGTGGGATGGTCAGTTAA
AACGAATGAAAGCTAAAAAAGAATGGAAAGAATTGCAGCAAGAAAAATTCGCAGAGCGAC
TTAAAGGAGATTAG
>g755.t9 Gene=g755 Length=194
MLMCDNCYSLIGQRHGGFLGILQRALARASPHIWFERNEAKDRSAVAARLREHVSDPKNP
PILIFPEGTCINNTSVMQFKKGSFEVGGVIYPVAIKYDARFGDAFWNSSRYSMMQYLYMM
MTSWAIVCDVWYLPPMYCEEGESAIDFANRVKRTIAKQGGLVDLMWDGQLKRMKAKKEWK
ELQQEKFAERLKGD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g755.t9 | CDD | cd07991 | LPLAT_LPCAT1-like | 2 | 172 | 3.45436E-89 |
| 2 | g755.t9 | PANTHER | PTHR23063 | PHOSPHOLIPID ACYLTRANSFERASE | 1 | 192 | 2.0E-108 |
| 3 | g755.t9 | PANTHER | PTHR23063:SF2 | ACYLTRANSFERASE-LIKE | 1 | 192 | 2.0E-108 |
| 1 | g755.t9 | Pfam | PF01553 | Acyltransferase | 9 | 95 | 4.0E-12 |
| 6 | g755.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 115 | - |
| 8 | g755.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 116 | 133 | - |
| 7 | g755.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 134 | 194 | - |
| 5 | g755.t9 | SMART | SM00563 | plsc_2 | 1 | 98 | 2.9E-10 |
| 4 | g755.t9 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 60 | 137 | 2.48E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
