General information for g7579.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, muscle-type A1.
Parent gene
- The parent gene g7579 is located on chr_2: 24638903..24639782 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7579 | g7579.t6 | TTS | g7579.t6 | 24637378 | 24637378 |
| chr_2 | g7579 | g7579.t6 | isoform | g7579.t6 | 24637801 | 24639782 |
| chr_2 | g7579 | g7579.t6 | exon | g7579.t6.exon1 | 24637801 | 24638778 |
| chr_2 | g7579 | g7579.t6 | cds | g7579.t6.CDS1 | 24637801 | 24638778 |
| chr_2 | g7579 | g7579.t6 | exon | g7579.t6.exon2 | 24639743 | 24639782 |
| chr_2 | g7579 | g7579.t6 | cds | g7579.t6.CDS2 | 24639743 | 24639745 |
| chr_2 | g7579 | g7579.t6 | TSS | g7579.t6 | 24639846 | 24639846 |
Sequences
>g7579.t6 Gene=g7579 Length=1018
ATGTGTGACGATGATGTTGCTGCTTTAGTCGTTGACAATGGACTCATATGTCGGTGATGA
GGCTCAAAGCAAAAGAGGTATCCTCACATTGAAATATCCAATTGAACACGGTATCATCAC
AAACTGGGACGATATGGAAAAGATCTGGCATCACACATTCTACAATGAACTTCGTGTTGC
ACCAGAAGAACACCCAGTCTTGCTCACAGAAGCTCCATTGAACCCAAAGGCTAACCGTGA
GAAGATGACACAAATCATGTTCGAAACCTTCAACTCACCAGCTATGTATGTCGCCATCCA
AGCCGTTCTCTCATTGTACGCTTCAGGTCGTACCACTGGTATTGTTTTGGATTCAGGAGA
TGGTGTTTCACACACAGTCCCAATTTATGAAGGTTATGCCTTGCCACATGCCATCCTCCG
TCTTGACTTGGCTGGTCGTGACTTGACTGATTACTTGATGAAGATCTTGACCGAACGTGG
TTACTCATTCACAACCACTGCTGAACGTGAAATTGTTCGTGATATTAAGGAAAAATTGTG
CTATGTTGCTTTGGACTTTGAACAAGAAATGGCCACAGCTGCTGCATCAACATCACTCGA
GAAGTCATATGAATTGCCTGATGGTCAAGTTATCACCATCGGTAATGAACGTTTCCGTTG
CCCAGAAGCATTGTTCCAACCATCATTCTTGGGTATGGAATCATGCGGTATTCACGAGAC
CGTCTACAATTCAATCATGAAATGCGACGTTGATATCCGTAAGGACTTGTATGCCAACAC
AGTCATGTCAGGTGGCACAACAATGTACCCAGGTATTGCCGATCGTATGCAAAAGGAAAT
CACTGCCTTGGCTCCATCAACCATCAAGATCAAGATTATTGCTCCACCAGAACGTAAATA
CTCTGTATGGATCGGAGGTTCAATCTTGGCATCACTCTCAACCTTCCAACAAATGTGGAT
CTCAAAGGAAGAATACGACGAATCAGGCCCAGGCATTGTCCACAGAAAGTGCTTCTAA
>g7579.t6 Gene=g7579 Length=326
MDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP
LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY
ALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT
AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDI
RKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKEEYDESGPGIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g7579.t6 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 25 | 132 | 6.71728E-17 |
| 12 | g7579.t6 | Gene3D | G3DSA:3.30.420.40 | - | 2 | 322 | 3.4E-168 |
| 11 | g7579.t6 | Gene3D | G3DSA:3.30.420.40 | - | 89 | 289 | 3.4E-168 |
| 10 | g7579.t6 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 131 | 223 | 3.4E-168 |
| 2 | g7579.t6 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 2 | 325 | 5.2E-225 |
| 3 | g7579.t6 | PANTHER | PTHR11937 | ACTIN | 2 | 325 | 5.2E-225 |
| 7 | g7579.t6 | PRINTS | PR00190 | Actin signature | 12 | 34 | 1.0E-44 |
| 5 | g7579.t6 | PRINTS | PR00190 | Actin signature | 66 | 79 | 1.0E-44 |
| 4 | g7579.t6 | PRINTS | PR00190 | Actin signature | 91 | 110 | 1.0E-44 |
| 6 | g7579.t6 | PRINTS | PR00190 | Actin signature | 187 | 203 | 1.0E-44 |
| 1 | g7579.t6 | Pfam | PF00022 | Actin | 3 | 326 | 5.8E-131 |
| 16 | g7579.t6 | ProSitePatterns | PS00406 | Actins signature 1. | 4 | 14 | - |
| 15 | g7579.t6 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 55 | 67 | - |
| 14 | g7579.t6 | ProSitePatterns | PS00432 | Actins signature 2. | 307 | 315 | - |
| 17 | g7579.t6 | SMART | SM00268 | actin_3 | 1 | 326 | 2.3E-191 |
| 9 | g7579.t6 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 2 | 104 | 1.39E-44 |
| 8 | g7579.t6 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 98 | 326 | 2.16E-99 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed