General information for g7720.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosolic non-specific dipeptidase.
Parent gene
- The parent gene g7720 is located on chr_2: 25454486..25455286 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7720 | g7720.t1 | TTS | g7720.t1 | 25453186 | 25453186 |
| chr_2 | g7720 | g7720.t1 | isoform | g7720.t1 | 25453263 | 25455286 |
| chr_2 | g7720 | g7720.t1 | exon | g7720.t1.exon1 | 25453263 | 25453447 |
| chr_2 | g7720 | g7720.t1 | cds | g7720.t1.CDS1 | 25453263 | 25453447 |
| chr_2 | g7720 | g7720.t1 | exon | g7720.t1.exon2 | 25453508 | 25454486 |
| chr_2 | g7720 | g7720.t1 | cds | g7720.t1.CDS2 | 25453508 | 25454486 |
| chr_2 | g7720 | g7720.t1 | exon | g7720.t1.exon3 | 25454904 | 25455141 |
| chr_2 | g7720 | g7720.t1 | cds | g7720.t1.CDS3 | 25454904 | 25455141 |
| chr_2 | g7720 | g7720.t1 | exon | g7720.t1.exon4 | 25455252 | 25455286 |
| chr_2 | g7720 | g7720.t1 | cds | g7720.t1.CDS4 | 25455252 | 25455286 |
| chr_2 | g7720 | g7720.t1 | TSS | g7720.t1 | 25455351 | 25455351 |
Sequences
>g7720.t1 Gene=g7720 Length=1437
ATGAGCTTGCCAGAAATATTGAATAAATTATTTGCCCACATTGATGGTAATCATAACAAA
TATATTGAGACATTGGCTGAAGCTGTTTCAATTAAAAGCATCAGTGCACACCCAAAACAT
CGAGATGAGTGTCAACGTATGATCGATTGGACGCAATATAAATTGGAAACACTTGGAATA
GTGTGTGAACAAGTCAATATTGGTATGCAATCGTTACCAGATAACTCAACTCTCAAATTA
CCTAATGTCTTACTTGGTGTAACTAAAAACTTTGATCCAAAAAAGAAAACTGTAGTAGTT
TATGGTCATCTTGATGTGCAACCAGCAGAATATTCTGACGGTTGGGAAACTGAACCATTT
AAATTAACATTACGCGATGGAAAATTGTATGGTCGTGGAGCGAGTGATGATAAAGGACCA
ATTATCGCATGGATGAACGCGATTGAAGCATATCACAATATAGGAACTGAATTACCAATA
AATTTGAAATTTGTTCTTGAAGCAATGGAAGAAAGTGGAAGTCTTGGATTGAATAAAATG
CTCATATCAAGAAAAGACTGGTTTGATGATGTCGATTATATTTGCATAACTGATACTGCT
TGGTTAGGAAATGAACAACCTTGCATCTCACATGGATTAAGAGGTTTAAGTTACTTTAGA
ATTGAAGTTGAATGTGCATCAAAAGACTTGCATTCAGGGGTTTTTGGTGGAGTTATTCAT
GAAGCACTTACTGATTTAATCCATTTAATGTCTCAACTAGTAGATTGTAATGGAAAAATT
TTAATACCTGGCATTTATGACGATGTTGAACCAATAACGCCAAATGAAAATGAAATTTAT
GAGAAAATAACTTTTGATGTTGATGCTTTCCACAAGAGTTTAGGTACTCCCGGAAAATTG
TTATATGACACTAAAATAGCATTATTACAACATAGGTGGCGTTTTCCTTGCCTTTCATTA
CATGGAATTGAAGGTGCTTTTCATGAGTCAGGTCAAAAAACTGTGATTCCAAAAAAAGTT
ATTGGAAAGTTTTCAATTCGTACTGTTCCAAATCAAAGCACTGAAAAAATTGAAAAACTT
GTTGTAGACTATATAAATCAAAAATTCAAAGAATGGGGAAGTCCAAATAAAATGAAATGT
TTTATGTCACATGGAGCTAAACCTTTTAATGAAAATCCATTTCACGAAAATTACTTAGCT
GCAACAAAGGCTATTAAACATGTTTACAATTTGGAACCTGATATTATAAGAGGTGGTTCA
ACTGTGCCTGTTACTCTTTATTTTCAAGAAGTATCAGGAAGAAATGTACTTTTGCTGCCT
CTTGGATGTAGTGATGATGGAGCTCACTCACAAAATGAGAAAATTAATTTAAGAAATTTT
TTTGATGGAAGCAAAGTTCTTGCTTCCTACATTTATGAAGTCTCACAAATCGAATGA
>g7720.t1 Gene=g7720 Length=478
MSLPEILNKLFAHIDGNHNKYIETLAEAVSIKSISAHPKHRDECQRMIDWTQYKLETLGI
VCEQVNIGMQSLPDNSTLKLPNVLLGVTKNFDPKKKTVVVYGHLDVQPAEYSDGWETEPF
KLTLRDGKLYGRGASDDKGPIIAWMNAIEAYHNIGTELPINLKFVLEAMEESGSLGLNKM
LISRKDWFDDVDYICITDTAWLGNEQPCISHGLRGLSYFRIEVECASKDLHSGVFGGVIH
EALTDLIHLMSQLVDCNGKILIPGIYDDVEPITPNENEIYEKITFDVDAFHKSLGTPGKL
LYDTKIALLQHRWRFPCLSLHGIEGAFHESGQKTVIPKKVIGKFSIRTVPNQSTEKIEKL
VVDYINQKFKEWGSPNKMKCFMSHGAKPFNENPFHENYLAATKAIKHVYNLEPDIIRGGS
TVPVTLYFQEVSGRNVLLLPLGCSDDGAHSQNEKINLRNFFDGSKVLASYIYEVSQIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7720.t1 | CDD | cd05676 | M20_dipept_like_CNDP | 10 | 477 | 0.0 |
| 8 | g7720.t1 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 17 | 468 | 8.6E-174 |
| 7 | g7720.t1 | Gene3D | G3DSA:3.30.70.360 | - | 214 | 388 | 8.6E-174 |
| 3 | g7720.t1 | PANTHER | PTHR43270 | BETA-ALA-HIS DIPEPTIDASE | 6 | 477 | 1.3E-189 |
| 4 | g7720.t1 | PANTHER | PTHR43270:SF11 | CYTOSOLIC NON-SPECIFIC DIPEPTIDASE | 6 | 477 | 1.3E-189 |
| 2 | g7720.t1 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 100 | 472 | 2.8E-33 |
| 1 | g7720.t1 | Pfam | PF07687 | Peptidase dimerisation domain | 212 | 372 | 1.5E-12 |
| 6 | g7720.t1 | ProSitePatterns | PS00759 | ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. | 134 | 173 | - |
| 5 | g7720.t1 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 7 | 475 | 1.23E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed