General information for g7740.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7740 is located on chr_2: 25624554..25629026 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7740 | g7740.t2 | isoform | g7740.t2 | 25623593 | 25625046 |
| chr_2 | g7740 | g7740.t2 | exon | g7740.t2.exon1 | 25623593 | 25624105 |
| chr_2 | g7740 | g7740.t2 | exon | g7740.t2.exon2 | 25624200 | 25624666 |
| chr_2 | g7740 | g7740.t2 | cds | g7740.t2.CDS1 | 25624554 | 25624666 |
| chr_2 | g7740 | g7740.t2 | exon | g7740.t2.exon3 | 25624797 | 25625046 |
| chr_2 | g7740 | g7740.t2 | cds | g7740.t2.CDS2 | 25624797 | 25625046 |
| chr_2 | g7740 | g7740.t2 | TSS | g7740.t2 | NA | NA |
| chr_2 | g7740 | g7740.t2 | TTS | g7740.t2 | NA | NA |
Sequences
>g7740.t2 Gene=g7740 Length=1230
TTGCGTTTTGTTTAAGGGGAAAGCCACTTTGAACAAAAAAAATGAGAAAAACGTTTGTCA
GTTGATTTCAAAATTTGTAGAGTTGTAAAGAAAAAAAATTTGCGCTGAAATATATTTTTT
TAATCTTCAATTTTTTGACTTTCAATTGTAAATCAAGTGCATAAGTGTATAAATAATATT
GTTAAAGCTGCAAAGCAGCGAACAAAATCATAAAAAAATTGGAAAACGAGGTGTATATAA
GGAGAGAGAACGATAATATTGAAAAACGAAGAGTGGCTTTGACAAGTTTCAAAACACATC
AATAATTCAATTATCTCAAGTTACAAACAACAAAAGATATTGAAAACATAAAAATTAATA
TTAGCTAGTGATAATCAACAAGATCCAGTAAAGAAAATTTAAGAAAAAAGTGGAAATTTA
TAAAATTTCATCTTTTCCGTTGCATACTAAATTGAGCTACTGAAATCTTCATTTGTGTTA
GTGTGAGTGAAAGAGAAAGAAAAACAATATTGATCAATTATTCTTATGCGCGTGCGTTTT
AAAGGAAGGAAATATAAATTAGAGAATTGTGCTACATAAAATTTATATATTTCGTAATTG
AGAGTGAAATTCTAATTGATATATTTTATTGCGAAATAAAAGAGAGACCATCGGATTTCT
CTTTATAATAATTCACTATTTGATAGTGAATACCGTTCACTATATTTTTCTGGAAAAGAA
AATATCAAAAAAAGAGTGATTGTTAAAATTCATTCAAGTTCTTCCCACAACAACTTATGA
TCTCAATTTAAAACAAAACTCCCACAAAGTCAACGTCGTAATCTACATAAATTAGTAAAC
AAAGCAAAGGCTAGAAATCCAGTAAAAATGTTTAGTCCGGAATATGAAAAACGTTTGCTT
AAACATTGCAGTCCAGCCGCTAGGCGTTTATTCGCTACACCTGAGTCATCGTCACCTTCA
GACCGATTTATTCCATGCAGAGCAAACAACAACTGGGAAACGAATTATTCAACATTGACG
AAATCAAGTGAGAATTCATCACAATCAAAAAAGCAGCGAGAATGTGGTGAATCTGCTCGT
GATAGTCTTGCATATTCATGTCTATTGAAGAATGAATTACTAGGCGCAACTATTCAAGAT
ATTAAGAATATATCAGACGAAAATAAAATTGGATGTCTATCGAATAGTAATAATCGTGGT
TTATTCAAATATCAATCACCAGCAAGACAG
>g7740.t2 Gene=g7740 Length=121
MFSPEYEKRLLKHCSPAARRLFATPESSSPSDRFIPCRANNNWETNYSTLTKSSENSSQS
KKQRECGESARDSLAYSCLLKNELLGATIQDIKNISDENKIGCLSNSNNRGLFKYQSPAR
Q
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
