General information for g7746.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative DNA N6-methyl adenine demethylase.
Parent gene
- The parent gene g7746 is located on chr_2: 25670012..25672452 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7746 | g7746.t1 | isoform | g7746.t1 | 25670012 | 25672452 |
| chr_2 | g7746 | g7746.t1 | exon | g7746.t1.exon1 | 25670012 | 25671088 |
| chr_2 | g7746 | g7746.t1 | cds | g7746.t1.CDS1 | 25670012 | 25671088 |
| chr_2 | g7746 | g7746.t1 | exon | g7746.t1.exon2 | 25671275 | 25671418 |
| chr_2 | g7746 | g7746.t1 | cds | g7746.t1.CDS2 | 25671275 | 25671418 |
| chr_2 | g7746 | g7746.t1 | exon | g7746.t1.exon3 | 25672330 | 25672452 |
| chr_2 | g7746 | g7746.t1 | cds | g7746.t1.CDS3 | 25672330 | 25672452 |
| chr_2 | g7746 | g7746.t1 | TSS | g7746.t1 | NA | NA |
| chr_2 | g7746 | g7746.t1 | TTS | g7746.t1 | NA | NA |
Sequences
>g7746.t1 Gene=g7746 Length=1344
ATGATGAGTGCAGCCGCACCACAGACGACGTCCACAACTACGGACGATCCGTCAGAAAGT
GGCTTACCTGCATTCACCACGTTTCAAGCAACAGAATTAGAAAATACGTGGGAATATTAT
GACAGATCCGTGATTGCACATCAAAATAATGATTTATCAGCATCTGTCAATAGTTATACG
AGACCATGGGAAATGGAGAGCAAAGATCAACCTCAACAAATTCATCATGTTCAACATCGC
GGTTTTGAGCCATTTCCAAAGTTGCCTTCATTTCAAAGTCAATTTCATTCATTTGCCGAT
AATAATTTGGTGCCAGAGCCAAGTTTGCCATCGCAAGTAACTGCAGTTCCGGTGCCAATT
TCACCATCATCAGCCTCGCCTTCAAATGGAGCATTGACACAATTGACACAATTAACAACA
ACACCTTTAACACCTTTACAATCGTCACTTACGACTTTGCCACCCTCAAATTTTCATACA
TTGGCAGCTGTCAATGTTAATGCACCACGAGGCTATCCACTCGTTCCTGCTCCAATTCAG
GCACGCGATATTCCTACAATTCAACAACAATATATCGATGAACGCCATATTCAATTGTAT
CAACCAATAACAACGACTGCAACTTTTCATCATCCGGCACCACCACAACCATTGCAATCA
AGTGTTGTGACAGTCTTGAAAAATGAATCAGTCAATTTTGATCTCAAAAATGGACTACAT
CATCATCCACATATTACACATCACAATGCATCATTTCAAAATGCAACATTGATGGATACA
AGTAACAGCAGTAGTTATATGGATACAAGCAATGTTAGTACACCAAAGACAAGCAATAAA
ACAAATGGCATGAATGGTAACACACCAAATGGTAAAGAAACGCGGAAGAAAGAAAGAAGA
AAAATACGGGCGAGCTCATTAGAGTCCAGCACTGAGTCAGATGCTAGCAGTGCTATGGAC
ATTGATGGAGCTAATGGTGTTGCACAAGTTGCCGCTGTATCAAGTACTGATCATTTTAAA
TCACCTATGCATCCAAGTGCTGAAAATGGTGATCGTTCTGGAAATGGTGAAAAACAGCAG
AAACAAAAGAAAAGAAAACGCTGCGGTGAATGTATCGGTTGTGCAAAAAAAGACAACTGT
GGTGAATGTGCTCCATGTCGCAATGACAAAAGTCATCAAATTTGCAAGCAACGTCGCTGC
GAAAAATTAACAGAGAAAAAGGATGAAAAGCTGCCTGTATGGTCTAATTACTGTTTTATT
GATATTGTACTTGAGAAATCGAGAAAATTATTTAAATTCTTAGAAGAAATATCTTATAGT
GATGCAACACATGGTGTCGATTAA
>g7746.t1 Gene=g7746 Length=447
MMSAAAPQTTSTTTDDPSESGLPAFTTFQATELENTWEYYDRSVIAHQNNDLSASVNSYT
RPWEMESKDQPQQIHHVQHRGFEPFPKLPSFQSQFHSFADNNLVPEPSLPSQVTAVPVPI
SPSSASPSNGALTQLTQLTTTPLTPLQSSLTTLPPSNFHTLAAVNVNAPRGYPLVPAPIQ
ARDIPTIQQQYIDERHIQLYQPITTTATFHHPAPPQPLQSSVVTVLKNESVNFDLKNGLH
HHPHITHHNASFQNATLMDTSNSSSYMDTSNVSTPKTSNKTNGMNGNTPNGKETRKKERR
KIRASSLESSTESDASSAMDIDGANGVAQVAAVSSTDHFKSPMHPSAENGDRSGNGEKQQ
KQKKRKRCGECIGCAKKDNCGECAPCRNDKSHQICKQRRCEKLTEKKDEKLPVWSNYCFI
DIVLEKSRKLFKFLEEISYSDATHGVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7746.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 3 | g7746.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 290 | - |
| 7 | g7746.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 321 | - |
| 5 | g7746.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 307 | - |
| 4 | g7746.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 362 | - |
| 1 | g7746.t1 | PANTHER | PTHR13419:SF0 | AGAP007178-PA | 80 | 411 | 1.8E-45 |
| 2 | g7746.t1 | PANTHER | PTHR13419 | ZINC FINGER-CONTAINING | 80 | 411 | 1.8E-45 |
| 8 | g7746.t1 | ProSiteProfiles | PS51058 | Zinc finger CXXC-type profile. | 361 | 401 | 12.365 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K03344 (Dvl-binding protein IDAX)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed