General information for g7758.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc transporter ZIP11.
Parent gene
- The parent gene g7758 is located on chr_2: 25830558..25832183 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7758 | g7758.t3 | isoform | g7758.t3 | 25827818 | 25832183 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon1 | 25827818 | 25828505 |
| chr_2 | g7758 | g7758.t3 | TTS | g7758.t3 | 25827842 | 25827842 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon2 | 25828897 | 25829757 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS1 | 25829713 | 25829757 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon3 | 25829821 | 25829854 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS2 | 25829821 | 25829854 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon4 | 25829937 | 25830048 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS3 | 25829937 | 25830048 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon5 | 25830121 | 25830336 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS4 | 25830121 | 25830336 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon6 | 25830400 | 25830748 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS5 | 25830400 | 25830748 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon7 | 25830813 | 25831004 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS6 | 25830813 | 25831004 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon8 | 25831062 | 25831205 |
| chr_2 | g7758 | g7758.t3 | cds | g7758.t3.CDS7 | 25831062 | 25831169 |
| chr_2 | g7758 | g7758.t3 | exon | g7758.t3.exon9 | 25832033 | 25832183 |
| chr_2 | g7758 | g7758.t3 | TSS | g7758.t3 | 25832182 | 25832182 |
Sequences
>g7758.t3 Gene=g7758 Length=2747
AGTCAGTGTGGGCTAAGAAGAATTGAAATATTTGGTTTGCATTATTTTTAATCATTTTCT
ATTGATAAACATGAACAACGCAACTTAATTGTACAATTTGGTTAAATTTAAAAGCAAACA
CATCGTGACAACGAGCACAAATTTGCCAAAGGCATAAGAGATAAAATAAAGTACTTAGAC
AGTCAAAATGATTGAGGGATACAATGCTGTTACACAAGCTTTGCTTGGCACACTTCTGAC
ATGGGGATTGACTGCTGCTGGCGCTGGTCTAGTCATTTTTCTACGCGGTAATCACAGAAA
AACACTCGATGCATCATTAGGATTTAGTGCTGGTGTTATGGTTGCTGCTAGTTTTTGGTC
ATTACTTGCACCTGCAATTGAACTGGCAGAATCAAGTGGTGATTATGGAAGTGAGGGACA
ATTTGCATTTGTTCCAGTCGCAGCTGGATTTCTTTTTGGTGCAATTTTTGTATATGCGAC
AGATAGAGTCATAACGTATTTGGGTATAAATTCAGCATCAATGATGATTCAATTAACGCA
ATCAAATAAAGACAAAGCTGACATAGCGATGGATGAATGTGCCTTGGAGCATGGCAAGCC
AATGATTGCAGTAGGGGCACTTAATGAGCATTCAACGACAATTGGTATGGACAGTTTTGC
TGATTGCTTAAATAATCAACACAGTGGACAGACAAGAAAACGAAGAAAGAAGGACATGCA
TTCACATGATGCTGAAACATATGAAACAAGTTCACAAATTGAATTACAAAATCGTCTTAC
ACATTGGAAGAGAATAGTTTTACTTATAACTGCTGTTACCATTCATAATATTCCTGAGGG
TCTCGCTGTTGGAGTTTCATTTGGTGCTATTGGTTCAACTAGTAAAGCAACTTTTGAAGC
AGCCAGAAATTTAGCGATCGGTATTGGAATTCAAAATTTCCCCGAAGGGCTTGCAGTTTC
TCTGCCCTTGCATGCTAGTGGATTTTCTTTATTGAAAAGCTTTTGGTTTGGCCAATTGAG
CGGTATGGTGGAACCAGTTTTTGGAGTGCTAGGCGCACTTGCTGTCAGTGTCGCAACAAA
AATTCTACCCATCGGCCTAAGTTTTGCAGCAGGTGCAATGATATTTATAGTTGCAGATGA
TATTCTCCCAGAAGCACATTCTAGTGGAAATGGAATGATTGCGACGTGGGGCTGTATAGT
TGGTTTTATAGTTATGATGTGCCTGGATGTAGGATTAGGCTAAAAACAATGATAATGACA
GTGAAAATGAAAAAAGTTTACATAGAGACCTCTTTTTTGCGATGAGATAAACTTTTTTTG
TACTTAGGTAATATAAACATAAATTGATTGACTCTATTTTTATACGAGTAAAAAAATTGT
TAGAATGAGCTAAAAGAGAGAATTTGCCATTAGATTAAAATTAATATCTCAGAAAAATAA
TGCTTTTCCACTTAAACGAAATTTATTATTGATTGTTTGGTTCCTAAAATATAAAAATGA
GAAGAATTTAACACCAAAAAAATCAATTATCACATTATTGTACTTTCCTTTAATCAAAAG
TTAGAAATTAATAAGTAAATTCTCGAAAGGAACTGAAATTCATTGTAGAATTTTTATTTA
TAAAAATTTTGAAATTTGAATCTTAAATTGTAAATTCTTTCATTTTATCTGAAATATTTA
TTTTTCAATAGAATTTCTGAATTTAAAGATTTATTTTCATACAAATCAAAAAGCTTCATT
TGATTTATTTGTAAAGATTATAAAAGTAGAAAGCTTAAGATCTTTAACATCAAAAAGAAT
TAAAATTGTTTTGACAATTTGATGTAAAAATTGAATATAAAAGTTCTTGTATGTTATACA
GAACCGAATGAAAATTCTCGAAAAAAATTTTTTTACTGTCTTTTCTCGATTATAAATGCC
CTTTTTTTATTCGAATCCTAAGGAACTAGACTGGCCGTTATTGGTGCTTAATTTGAATTA
GGCACTAACAGTTTGAAACACGCCAAATTCTTTGTTTTTGAGAATTATTTGTATAAATTT
GAGTAAATTAAGATTCCCAATTTACATATTTTTTGAGTTTTTTCATAAAACTCATTTGTT
TATGATCAAATTTACATAAAAATTTAGAAATAAAATTTCTTTGATATTACGGTTACTTGA
ATTTTTTTTTAAATTGTATGCAGATTTTTCGCGGATATTGTAAAAATTCAAATTAAGAAA
AATTTAACGGAAAAAAATTTTATTTGTCTCTCAGGATTCGAATAACAAAATAATTTTGTA
AGGATCGTTTATTTTTTGTATGCAAAAATATAAGTTATTTCAAAAATGACTTTTACATAC
GAATATGAGTTTGCTCTTATAATCAAGGGAAGACGGTAGGAAAAAACCTAATTGGTAATT
TTTCGCTTATAGACTACTTAAATTCAAGATTCAAATTAAAAATTTTAAAAAATTACAAGA
TGTAGACCCTTGATGAACATTCGAGCGTCTGCATTTTAAAAGTTTTTATAAAATTTTAAT
TTATATCAATGAGCTGTTTCCTTTCGTGAAAGACTATTCCGTTTTGTACTTTTAGTAAGT
ATCTATACTAAGTATTTTTTAAACACCTATTTAATTTTATTATCATACGATGAAATCAAT
TTTCTTGTATTAAAAATTATTTTTCTTGTGATAATTTCAACAATAAGAAAAAATAAAAAA
TATTTAAAAATTTTGAATCCATTAAACAATATCTTTTTGATTAAAGC
>g7758.t3 Gene=g7758 Length=351
MIEGYNAVTQALLGTLLTWGLTAAGAGLVIFLRGNHRKTLDASLGFSAGVMVAASFWSLL
APAIELAESSGDYGSEGQFAFVPVAAGFLFGAIFVYATDRVITYLGINSASMMIQLTQSN
KDKADIAMDECALEHGKPMIAVGALNEHSTTIGMDSFADCLNNQHSGQTRKRRKKDMHSH
DAETYETSSQIELQNRLTHWKRIVLLITAVTIHNIPEGLAVGVSFGAIGSTSKATFEAAR
NLAIGIGIQNFPEGLAVSLPLHASGFSLLKSFWFGQLSGMVEPVFGVLGALAVSVATKIL
PIGLSFAAGAMIFIVADDILPEAHSSGNGMIATWGCIVGFIVMMCLDVGLG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7758.t3 | PANTHER | PTHR11040:SF127 | ZINC TRANSPORTER ZIP11 | 13 | 347 | 3.2E-97 |
| 3 | g7758.t3 | PANTHER | PTHR11040 | ZINC/IRON TRANSPORTER | 13 | 347 | 3.2E-97 |
| 1 | g7758.t3 | Pfam | PF02535 | ZIP Zinc transporter | 30 | 346 | 4.9E-26 |
| 14 | g7758.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 20 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 12 | g7758.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 33 | 43 | - |
| 18 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 64 | - |
| 15 | g7758.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 65 | 78 | - |
| 22 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 97 | - |
| 13 | g7758.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 98 | 271 | - |
| 19 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 272 | 293 | - |
| 17 | g7758.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 294 | 298 | - |
| 23 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 319 | - |
| 11 | g7758.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 320 | 330 | - |
| 21 | g7758.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 350 | - |
| 16 | g7758.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 351 | 351 | - |
| 10 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 4 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 64 | - |
| 6 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 98 | - |
| 9 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 203 | 225 | - |
| 8 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 272 | 294 | - |
| 7 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 316 | - |
| 5 | g7758.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 350 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K14717 (solute carrier family 39 (zinc transporter), member 11)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
