Gene loci information

Transcript annotation

  • This transcript has been annotated as Zinc transporter ZIP11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7758 g7758.t5 isoform g7758.t5 25829713 25832183
chr_2 g7758 g7758.t5 exon g7758.t5.exon1 25829713 25829757
chr_2 g7758 g7758.t5 cds g7758.t5.CDS1 25829713 25829757
chr_2 g7758 g7758.t5 exon g7758.t5.exon2 25829821 25829854
chr_2 g7758 g7758.t5 cds g7758.t5.CDS2 25829821 25829854
chr_2 g7758 g7758.t5 exon g7758.t5.exon3 25829937 25830048
chr_2 g7758 g7758.t5 cds g7758.t5.CDS3 25829937 25830048
chr_2 g7758 g7758.t5 exon g7758.t5.exon4 25830121 25830336
chr_2 g7758 g7758.t5 cds g7758.t5.CDS4 25830121 25830336
chr_2 g7758 g7758.t5 exon g7758.t5.exon5 25830400 25830748
chr_2 g7758 g7758.t5 cds g7758.t5.CDS5 25830400 25830748
chr_2 g7758 g7758.t5 exon g7758.t5.exon6 25830813 25831004
chr_2 g7758 g7758.t5 cds g7758.t5.CDS6 25830813 25831004
chr_2 g7758 g7758.t5 exon g7758.t5.exon7 25831062 25831205
chr_2 g7758 g7758.t5 cds g7758.t5.CDS7 25831062 25831169
chr_2 g7758 g7758.t5 exon g7758.t5.exon8 25832033 25832183
chr_2 g7758 g7758.t5 TSS g7758.t5 25832182 25832182
chr_2 g7758 g7758.t5 TTS g7758.t5 NA NA

Sequences

>g7758.t5 Gene=g7758 Length=1243
AGTCAGTGTGGGCTAAGAAGAATTGAAATATTTGGTTTGCATTATTTTTAATCATTTTCT
ATTGATAAACATGAACAACGCAACTTAATTGTACAATTTGGTTAAATTTAAAAGCAAACA
CATCGTGACAACGAGCACAAATTTGCCAAAGGCATAAGAGATAAAATAAAGTACTTAGAC
AGTCAAAATGATTGAGGGATACAATGCTGTTACACAAGCTTTGCTTGGCACACTTCTGAC
ATGGGGATTGACTGCTGCTGGCGCTGGTCTAGTCATTTTTCTACGCGGTAATCACAGAAA
AACACTCGATGCATCATTAGGATTTAGTGCTGGTGTTATGGTTGCTGCTAGTTTTTGGTC
ATTACTTGCACCTGCAATTGAACTGGCAGAATCAAGTGGTGATTATGGAAGTGAGGGACA
ATTTGCATTTGTTCCAGTCGCAGCTGGATTTCTTTTTGGTGCAATTTTTGTATATGCGAC
AGATAGAGTCATAACGTATTTGGGTATAAATTCAGCATCAATGATGATTCAATTAACGCA
ATCAAATAAAGACAAAGCTGACATAGCGATGGATGAATGTGCCTTGGAGCATGGCAAGCC
AATGATTGCAGTAGGGGCACTTAATGAGCATTCAACGACAATTGGTATGGACAGTTTTGC
TGATTGCTTAAATAATCAACACAGTGGACAGACAAGAAAACGAAGAAAGAAGGACATGCA
TTCACATGATGCTGAAACATATGAAACAAGTTCACAAATTGAATTACAAAATCGTCTTAC
ACATTGGAAGAGAATAGTTTTACTTATAACTGCTGTTACCATTCATAATATTCCTGAGGG
TCTCGCTGTTGGAGTTTCATTTGGTGCTATTGGTTCAACTAGTAAAGCAACTTTTGAAGC
AGCCAGAAATTTAGCGATCGGTATTGGAATTCAAAATTTCCCCGAAGGGCTTGCAGTTTC
TCTGCCCTTGCATGCTAGTGGATTTTCTTTATTGAAAAGCTTTTGGTTTGGCCAATTGAG
CGGTATGGTGGAACCAGTTTTTGGAGTGCTAGGCGCACTTGCTGTCAGTGTCGCAACAAA
AATTCTACCCATCGGCCTAAGTTTTGCAGCAGGTGCAATGATATTTATAGTTGCAGATGA
TATTCTCCCAGAAGCACATTCTAGTGGAAATGGAATGATTGCGACGTGGGGCTGTATAGT
TGGTTTTATAGTTATGATGTGCCTGGATGTAGGATTAGGCTAA

>g7758.t5 Gene=g7758 Length=351
MIEGYNAVTQALLGTLLTWGLTAAGAGLVIFLRGNHRKTLDASLGFSAGVMVAASFWSLL
APAIELAESSGDYGSEGQFAFVPVAAGFLFGAIFVYATDRVITYLGINSASMMIQLTQSN
KDKADIAMDECALEHGKPMIAVGALNEHSTTIGMDSFADCLNNQHSGQTRKRRKKDMHSH
DAETYETSSQIELQNRLTHWKRIVLLITAVTIHNIPEGLAVGVSFGAIGSTSKATFEAAR
NLAIGIGIQNFPEGLAVSLPLHASGFSLLKSFWFGQLSGMVEPVFGVLGALAVSVATKIL
PIGLSFAAGAMIFIVADDILPEAHSSGNGMIATWGCIVGFIVMMCLDVGLG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7758.t5 PANTHER PTHR11040:SF127 ZINC TRANSPORTER ZIP11 13 347 3.2E-97
3 g7758.t5 PANTHER PTHR11040 ZINC/IRON TRANSPORTER 13 347 3.2E-97
1 g7758.t5 Pfam PF02535 ZIP Zinc transporter 30 346 4.9E-26
14 g7758.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
20 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 32 -
12 g7758.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 33 43 -
18 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 44 64 -
15 g7758.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 65 78 -
22 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 79 97 -
13 g7758.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 98 271 -
19 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 272 293 -
17 g7758.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 294 298 -
23 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 299 319 -
11 g7758.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 320 330 -
21 g7758.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 331 350 -
16 g7758.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 351 351 -
10 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
4 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 45 64 -
6 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 98 -
9 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 203 225 -
8 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 272 294 -
7 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 299 316 -
5 g7758.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 331 350 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values