General information for g7767.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7767 is located on chr_2: 25871963..25873057 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7767 | g7767.t12 | isoform | g7767.t12 | 25871682 | 25872670 |
| chr_2 | g7767 | g7767.t12 | exon | g7767.t12.exon1 | 25871682 | 25871867 |
| chr_2 | g7767 | g7767.t12 | TSS | g7767.t12 | 25871683 | 25871683 |
| chr_2 | g7767 | g7767.t12 | cds | g7767.t12.CDS1 | 25871697 | 25871867 |
| chr_2 | g7767 | g7767.t12 | exon | g7767.t12.exon2 | 25871928 | 25872188 |
| chr_2 | g7767 | g7767.t12 | cds | g7767.t12.CDS2 | 25871928 | 25872161 |
| chr_2 | g7767 | g7767.t12 | exon | g7767.t12.exon3 | 25872469 | 25872670 |
| chr_2 | g7767 | g7767.t12 | TTS | g7767.t12 | 25873093 | 25873093 |
Sequences
>g7767.t12 Gene=g7767 Length=649
AGAATATTATAAAATATGGGAGATCACGCACATCATCATCATCATCATATGCCAGACCTT
GATGCAACAAGTGCTATGCCAGTGCTTTCAACTGGAATGGATCATCATCACATGCATTCC
GATATGGGACATTCAATGAATGACTCAGCTGCATCTCATGCTTTTCATCACATGATGTCC
ATGGCTTTTCATGGCGGTTGCAACGAAACAATTTTATTCACTCAATGGACGATTGACAGT
TGCTTTGGTCTTGTGTGGTCAATGATTGTTATTTTCATTTTTGGTATTCTATATGAAGGT
TTAAAATATTATCGTGAACATTTATTCTGGAAGACTTATAATGCATTGCAATACAGAGCA
GTAGGTGCTCCAGAGAAAAATGGAACATCTGAAAATGCCGATTCACGTGTTGTACAGTAA
GTAGAAAATCATTGAATTTATTCTAAAACCAACAATATTTTCACTGATGCATCTTTATCA
ATCGTTTCTACATTTAATTCAAGTAACATTATCACTAATGCTGATGCTCATATTTATGAC
ATACAACACATGGTTATGTCTTGCCGTTGTTTTTGGAGCTATGGTAGGATACTTTTTGTT
CGGATGGAAGAAATCAATAGTAGTCGATGTTACAGAGCATTGTCATTGA
>g7767.t12 Gene=g7767 Length=134
MGDHAHHHHHHMPDLDATSAMPVLSTGMDHHHMHSDMGHSMNDSAASHAFHHMMSMAFHG
GCNETILFTQWTIDSCFGLVWSMIVIFIFGILYEGLKYYREHLFWKTYNALQYRAVGAPE
KNGTSENADSRVVQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7767.t12 | PANTHER | PTHR12483:SF27 | COPPER TRANSPORTER 1A, ISOFORM C-RELATED | 28 | 110 | 1.6E-13 |
| 3 | g7767.t12 | PANTHER | PTHR12483 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS | 28 | 110 | 1.6E-13 |
| 1 | g7767.t12 | Pfam | PF04145 | Ctr copper transporter family | 56 | 115 | 4.3E-12 |
| 6 | g7767.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 76 | - |
| 7 | g7767.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 96 | - |
| 5 | g7767.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 97 | 134 | - |
| 4 | g7767.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 96 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0035434 | copper ion transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0005375 | copper ion transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed