Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g7767 | g7767.t5 | TSS | g7767.t5 | 25870003 | 25870003 |
chr_2 | g7767 | g7767.t5 | isoform | g7767.t5 | 25870027 | 25872670 |
chr_2 | g7767 | g7767.t5 | exon | g7767.t5.exon1 | 25870027 | 25870031 |
chr_2 | g7767 | g7767.t5 | exon | g7767.t5.exon2 | 25871684 | 25871867 |
chr_2 | g7767 | g7767.t5 | cds | g7767.t5.CDS1 | 25871697 | 25871867 |
chr_2 | g7767 | g7767.t5 | exon | g7767.t5.exon3 | 25871928 | 25872157 |
chr_2 | g7767 | g7767.t5 | cds | g7767.t5.CDS2 | 25871928 | 25872157 |
chr_2 | g7767 | g7767.t5 | exon | g7767.t5.exon4 | 25872469 | 25872670 |
chr_2 | g7767 | g7767.t5 | cds | g7767.t5.CDS3 | 25872469 | 25872670 |
chr_2 | g7767 | g7767.t5 | TTS | g7767.t5 | 25873093 | 25873093 |
>g7767.t5 Gene=g7767 Length=621
GTGTGAATATTATAAAATATGGGAGATCACGCACATCATCATCATCATCATATGCCAGAC
CTTGATGCAACAAGTGCTATGCCAGTGCTTTCAACTGGAATGGATCATCATCACATGCAT
TCCGATATGGGACATTCAATGAATGACTCAGCTGCATCTCATGCTTTTCATCACATGATG
TCCATGGCTTTTCATGGCGGTTGCAACGAAACAATTTTATTCACTCAATGGACGATTGAC
AGTTGCTTTGGTCTTGTGTGGTCAATGATTGTTATTTTCATTTTTGGTATTCTATATGAA
GGTTTAAAATATTATCGTGAACATTTATTCTGGAAGACTTATAATGCATTGCAATACAGA
GCAGTAGGTGCTCCAGAGAAAAATGGAACATCTGAAAATGCCGATTCACGTGTTGTACAA
CCAACAATATTTTCACTGATGCATCTTTATCAATCGTTTCTACATTTAATTCAAGTAACA
TTATCACTAATGCTGATGCTCATATTTATGACATACAACACATGGTTATGTCTTGCCGTT
GTTTTTGGAGCTATGGTAGGATACTTTTTGTTCGGATGGAAGAAATCAATAGTAGTCGAT
GTTACAGAGCATTGTCATTGA
>g7767.t5 Gene=g7767 Length=200
MGDHAHHHHHHMPDLDATSAMPVLSTGMDHHHMHSDMGHSMNDSAASHAFHHMMSMAFHG
GCNETILFTQWTIDSCFGLVWSMIVIFIFGILYEGLKYYREHLFWKTYNALQYRAVGAPE
KNGTSENADSRVVQPTIFSLMHLYQSFLHLIQVTLSLMLMLIFMTYNTWLCLAVVFGAMV
GYFLFGWKKSIVVDVTEHCH
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
2 | g7767.t5 | PANTHER | PTHR12483:SF27 | COPPER TRANSPORTER 1A, ISOFORM C-RELATED | 28 | 199 | 4.2E-40 |
3 | g7767.t5 | PANTHER | PTHR12483 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS | 28 | 199 | 4.2E-40 |
1 | g7767.t5 | Pfam | PF04145 | Ctr copper transporter family | 56 | 185 | 1.5E-28 |
8 | g7767.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 75 | - |
12 | g7767.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 96 | - |
10 | g7767.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 97 | 142 | - |
13 | g7767.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 143 | 162 | - |
7 | g7767.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 163 | 168 | - |
11 | g7767.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 187 | - |
9 | g7767.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 188 | 200 | - |
6 | g7767.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 96 | - |
4 | g7767.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 163 | - |
5 | g7767.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 170 | 187 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0035434 | copper ion transmembrane transport | BP |
GO:0016021 | integral component of membrane | CC |
GO:0005375 | copper ion transmembrane transporter activity | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.