General information for g7773.t69
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myotubularin-related protein 2.
Parent gene
- The parent gene g7773 is located on chr_2: 25897307..25898302 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7773 | g7773.t69 | isoform | g7773.t69 | 25897307 | 25898302 |
| chr_2 | g7773 | g7773.t69 | exon | g7773.t69.exon1 | 25897307 | 25897664 |
| chr_2 | g7773 | g7773.t69 | cds | g7773.t69.CDS1 | 25897308 | 25897664 |
| chr_2 | g7773 | g7773.t69 | exon | g7773.t69.exon2 | 25897723 | 25898178 |
| chr_2 | g7773 | g7773.t69 | cds | g7773.t69.CDS2 | 25897723 | 25898178 |
| chr_2 | g7773 | g7773.t69 | exon | g7773.t69.exon3 | 25898246 | 25898302 |
| chr_2 | g7773 | g7773.t69 | cds | g7773.t69.CDS3 | 25898246 | 25898302 |
| chr_2 | g7773 | g7773.t69 | TSS | g7773.t69 | NA | NA |
| chr_2 | g7773 | g7773.t69 | TTS | g7773.t69 | NA | NA |
Sequences
>g7773.t69 Gene=g7773 Length=871
ATGGACAGTTATACAAAAAAATCAGGATCTACTGATTCATTAAATAATGACACAGTTCTC
CCAAAAGAACTTCCATTTCAATTGCTATCGGGTGAAACATTTCAAGAGAAAAATGAAGTG
TCCTATATTTGTCCATATTTTGGTCCAATTCGAGGAATTCTTTACATAACAAATTATCGT
CTGTATTTTAAATCATCAATTGACAAAGATCCAGTACAACAAAATTTAGATGTAAATTTG
GGCGTTGTATCGAGAATTGAGAAAGTTGGTGGTGCTAGCTCTCGTGGTGAAAACTCATAT
GGTATTGATATTTTATGCAAGGATATGAGAAATTTGAGATTTGCACACAAACAAGAAAAT
CATTCTCGTCGCACAGTTTTTGGAAAACTGCAGAATTTTGCATTCCCTTTAGCAAATAAT
GAAAAGCTCTTTGCGTTCAACTATTCAGAAAAATTTCCTGAGGATGGATGGAATGTTTAT
GAGCCTATTGCTGAATTTCGTCGCATGGGATTAGGAGCAAATTCAAATATTGAATGGCGT
GTAACAAAAGTTAATCAAGCATATGAATTATGTGACAGTTATCCAGCTGTATTAGCAGTT
CCTCGCAGTATTTCTGATGAAGATTTAAAAGCTGTTGCAAACTTCCGTTCAAGAAATCGT
TTGCCAGTATTATCATGGATTCATCCACAATCATTAGCAACTATAACAAGATGCTCACAA
CCTCTGTGTGGAGTAAGTGGAAAAAAGTCATCAGAAGATGAAGGTTATATAAATGCAATA
ATGGAAGCAAATCCCTTATCACATAAACTCATTATCATGGATGCTCGTCCTTCAGCGAAT
GCGGTTGTGAATAAAGCAAAAGGAGGCGGTT
>g7773.t69 Gene=g7773 Length=290
MDSYTKKSGSTDSLNNDTVLPKELPFQLLSGETFQEKNEVSYICPYFGPIRGILYITNYR
LYFKSSIDKDPVQQNLDVNLGVVSRIEKVGGASSRGENSYGIDILCKDMRNLRFAHKQEN
HSRRTVFGKLQNFAFPLANNEKLFAFNYSEKFPEDGWNVYEPIAEFRRMGLGANSNIEWR
VTKVNQAYELCDSYPAVLAVPRSISDEDLKAVANFRSRNRLPVLSWIHPQSLATITRCSQ
PLCGVSGKKSSEDEGYINAIMEANPLSHKLIIMDARPSANAVVNKAKGGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7773.t69 | Gene3D | G3DSA:2.30.29.30 | - | 34 | 134 | 0.000 |
| 3 | g7773.t69 | PANTHER | PTHR10807:SF42 | MYOTUBULARIN-RELATED PROTEIN 2 | 25 | 290 | 0.000 |
| 4 | g7773.t69 | PANTHER | PTHR10807 | MYOTUBULARIN-RELATED | 25 | 290 | 0.000 |
| 1 | g7773.t69 | Pfam | PF02893 | GRAM domain | 26 | 136 | 0.000 |
| 2 | g7773.t69 | Pfam | PF06602 | Myotubularin-like phosphatase domain | 143 | 290 | 0.000 |
| 9 | g7773.t69 | ProSiteProfiles | PS51339 | Myotubularin phosphatase domain. | 156 | 290 | 42.456 |
| 7 | g7773.t69 | SMART | SM00568 | gram2001c | 22 | 90 | 0.000 |
| 5 | g7773.t69 | SUPERFAMILY | SSF50729 | PH domain-like | 26 | 148 | 0.000 |
| 6 | g7773.t69 | SUPERFAMILY | SSF52799 | (Phosphotyrosine protein) phosphatases II | 151 | 290 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
